View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8578_high_13 (Length: 340)
Name: NF8578_high_13
Description: NF8578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8578_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 11602089 - 11601757
Alignment:
| Q |
1 |
ctgatctcaaaatactataacaataacatcaacaatcccatcaagctcaagaaataaattctggtttacaaattctccagcacacaagtttctgaggagc |
100 |
Q |
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| T |
11602089 |
ctgatctcaaaatactataacaataacaacaacaatcccatcaagctcaagaaataaattctggtttacaaattctccagcacacaagtttctgaggagc |
11601990 |
T |
|
| Q |
101 |
tttgaacacaaagatagaatataatgatataaagtaaaggtttgtgagtgaagtatactgaggactacagggaaaactcttttgaaaccaaggttagaac |
200 |
Q |
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| T |
11601989 |
tttgaacacaaagatagaatataatgatataaagtaaaggtttgtgagtgaagtatactgaggactacagggaaaactcttttgaaaccaaggttagaac |
11601890 |
T |
|
| Q |
201 |
atctagaatcagatttggaagtgtgaatgagaatgtctaaggatttttctaagttagttgagatgaaaacaccaaagagtaacttgagctttgtaacacc |
300 |
Q |
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| T |
11601889 |
atctagaatcagatttggaagtgtgaatgagaatatctaaggatttttctaagttagttgagatgaaaacaccaaagagtaacttgagctttgtaacacc |
11601790 |
T |
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| Q |
301 |
attacacgaacacttatgattgaagtattatct |
333 |
Q |
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| T |
11601789 |
attacaccaacacttatgattgaagtcttatct |
11601757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 11602127 - 11602090
Alignment:
| Q |
56 |
aaattctggtttacaaattctccagcacacaagtttct |
93 |
Q |
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| T |
11602127 |
aaattctggttaacaaattctccagcacacaagtttct |
11602090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 28542716 - 28542792
Alignment:
| Q |
46 |
ctcaagaaataaattctggtttacaaattctccagcacacaagtttctgaggagctttgaacacaaagatagaatat |
122 |
Q |
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||||||||| | ||||||||||| || ||| |||||||| | ||||||||| ||||| |||| | ||||||||||| |
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| T |
28542716 |
ctcaagaaacatattctggtttagaatttcaccagcacataggtttctgagaagcttgaaacagagagatagaatat |
28542792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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