View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8578_high_15 (Length: 296)
Name: NF8578_high_15
Description: NF8578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8578_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 1167498 - 1167229
Alignment:
| Q |
18 |
aaaagtacgatagatttctcttcgttttacggacacgaaaaccaaaagcgacaagtgaagatataattgaaaatataaaattatataatcgatcaaaaag |
117 |
Q |
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| T |
1167498 |
aaaagtacgatagatttctcgtcgtttcacggacacgaaaaccaaaagcgacaagtgaagatataattgaaaatataaaattatataatcgatcaaaaag |
1167399 |
T |
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| Q |
118 |
atacaatttaggagtatttaatgaagtctaacccaaacaagtcttttagcttgtaaagtttccttactttcatgcatttttgtttatattaccacaaact |
217 |
Q |
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| T |
1167398 |
atacaatttaggagtatttaatgaagtctaacccaaataagtcttttagcttgtaaagtttccttacttttatgcatttttgtttatattaccacaaact |
1167299 |
T |
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| Q |
218 |
cttgctgtcttgcaaaccctaactaagaaccagaagacaattgaacgcctaaaaatattgcatgtctctg |
287 |
Q |
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| T |
1167298 |
cttgctgtcttgcaaaccctaactaagaaccagaagacaattgaacgcctaaaaatattgcatgtctctg |
1167229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 3924029 - 3923984
Alignment:
| Q |
67 |
gacaagtgaagatataattgaaaatataaaattatataatcgatca |
112 |
Q |
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| T |
3924029 |
gacaagtggagatataattgaaaatctaaaagtatataattgatca |
3923984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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