View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8578_high_17 (Length: 257)

Name: NF8578_high_17
Description: NF8578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8578_high_17
NF8578_high_17
[»] chr5 (3 HSPs)
chr5 (1-151)||(10548381-10548533)
chr5 (149-242)||(10548215-10548308)
chr5 (186-237)||(20319536-20319587)
[»] scaffold0590 (2 HSPs)
scaffold0590 (149-242)||(4983-5078)
scaffold0590 (177-242)||(7689-7754)
[»] chr6 (2 HSPs)
chr6 (149-238)||(27368828-27368917)
chr6 (149-238)||(27459175-27459264)
[»] chr1 (6 HSPs)
chr1 (155-242)||(31230307-31230392)
chr1 (194-242)||(11398283-11398331)
chr1 (188-242)||(18136457-18136512)
chr1 (201-242)||(52935193-52935234)
chr1 (201-242)||(52942828-52942869)
chr1 (201-242)||(52946236-52946277)
[»] chr7 (1 HSPs)
chr7 (201-242)||(47762096-47762137)
[»] chr3 (1 HSPs)
chr3 (194-242)||(30174411-30174459)
[»] chr4 (4 HSPs)
chr4 (201-242)||(40225492-40225533)
chr4 (186-237)||(5373890-5373941)
chr4 (194-237)||(17225256-17225299)
chr4 (149-194)||(8332561-8332606)
[»] chr2 (1 HSPs)
chr2 (197-242)||(42735303-42735350)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 10548533 - 10548381
Alignment:
Q  1 tataacaaaagtgaaaacgcgggaaacatgatggaaaaaggctttgatgaaacaataggtttaatttgtgttagattagatggtgggatttgagtatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10548533 tataacaaaagtgaaaacgcgggaaacatgatggaaaaaggctttgatgaaacaatagctttaatttgtgttagattagatggtgggatttgagtatttt 10548434  T
Q  101 agttagacatgtgtg--tgtatatgtaatggtactaaaatggatataaggaaa 151  Q
    |||||||||||||||  | ||||||||||||||||||||||||||||||||||    
T  10548433 agttagacatgtgtgtatatatatgtaatggtactaaaatggatataaggaaa 10548381  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 149 - 242
Target Start/End: Complemental strand, 10548308 - 10548215
Alignment:
Q  149 aaaatgagagaagaggttagaagaagaatgttgacaacacacatattccatgcttatttccttggcttttctcatatttaaaagggtccatatt 242  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || ||||||||||    
T  10548308 aaaatgagagaagaggttagaagaagaatgttgacatcacacatattccatacttatttccttggcttttctcatatttataaaggtccatatt 10548215  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 20319536 - 20319587
Alignment:
Q  186 cacacatattccatgcttatttccttggcttttctcatatttaaaagggtcc 237  Q
    |||||||||| |||||||||||||| | |||||||| |||||| ||||||||    
T  20319536 cacacatatttcatgcttatttcctggacttttctcttatttataagggtcc 20319587  T

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Target: scaffold0590 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 4983 - 5078
Alignment:
Q  149 aaaatgagagaagaggttagaagaagaatgttgacaacacacatattccatgcttatttccttggcttttctcatatt--taaaagggtccatatt 242  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||  || |||||||||||||    
T  4983 aaaatgagagaagaggttagaagaagaatgttgacatcacacatatttcatgcttatttccttggcttttctcatatttatataagggtccatatt 5078  T

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Target: scaffold0590; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 7689 - 7754
Alignment:
Q  177 tgttgacaacacacatattccatgcttatttccttggcttttctcatatttaaaagggtccatatt 242  Q
    |||||||| || ||||||| ||||||||||| ||||  ||||||| |||||| |||||| ||||||    
T  7689 tgttgacatcagacatatttcatgcttattttcttgatttttctcgtatttataagggttcatatt 7754  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 27368917 - 27368828
Alignment:
Q  149 aaaatgagagaagaggttagaagaagaatgttgacaacacacatattccatgcttatttc-cttggcttttctcatatttaaaagggtcca 238  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||| |||||| |||||| |||||| ||| |||||    
T  27368917 aaaatgagagaagtggttagaagaagaatgttgacatcacacatattccatgcctttttctcttggc-tttctcgtatttataagagtcca 27368828  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 27459264 - 27459175
Alignment:
Q  149 aaaatgagagaagaggttagaagaagaatgttgacaacacacatattccatgcttatttc-cttggcttttctcatatttaaaagggtcca 238  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||| |||||| |||||| |||||| ||| |||||    
T  27459264 aaaatgagagaagtggttagaagaagaatgttgacatcacacatattccatgcctttttctcttggc-tttctcgtatttataagagtcca 27459175  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 31230307 - 31230392
Alignment:
Q  155 agagaagaggttagaagaagaatgttgacaacacacatattccatgcttatttccttggcttttctcatatttaaaagggtccatatt 242  Q
    |||||||||||||| || |||||||||||| |||| || ||||||||||||| | |||| |||||||||||||| |||||||||||||    
T  31230307 agagaagaggttaggaggagaatgttgacatcaca-at-ttccatgcttattccattggtttttctcatatttataagggtccatatt 31230392  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 11398283 - 11398331
Alignment:
Q  194 ttccatgcttatttccttggcttttctcatatttaaaagggtccatatt 242  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||    
T  11398283 ttccatccttatttccttggcttttctcatatttataagggtccatatt 11398331  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 18136512 - 18136457
Alignment:
Q  188 cacatattccatgcttatttccttggc-ttttctcatatttaaaagggtccatatt 242  Q
    |||||||| |||||||||||||||||| |||||||||||||| |||||||||||||    
T  18136512 cacatatttcatgcttatttccttggctttttctcatatttataagggtccatatt 18136457  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 52935234 - 52935193
Alignment:
Q  201 cttatttccttggcttttctcatatttaaaagggtccatatt 242  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  52935234 cttatttccttggcttttctcatatttataagggtccatatt 52935193  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 52942869 - 52942828
Alignment:
Q  201 cttatttccttggcttttctcatatttaaaagggtccatatt 242  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  52942869 cttatttccttggcttttctcatatttataagggtccatatt 52942828  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 52946277 - 52946236
Alignment:
Q  201 cttatttccttggcttttctcatatttaaaagggtccatatt 242  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  52946277 cttatttccttggcttttctcatatttataagggtccatatt 52946236  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 47762137 - 47762096
Alignment:
Q  201 cttatttccttggcttttctcatatttaaaagggtccatatt 242  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  47762137 cttatttccttggcttttctcatatttataagggtccatatt 47762096  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 30174411 - 30174459
Alignment:
Q  194 ttccatgcttatttccttggcttttctcatatttaaaagggtccatatt 242  Q
    |||||||||||||||||||||||||||| |||||| |||| ||||||||    
T  30174411 ttccatgcttatttccttggcttttctcttatttataaggatccatatt 30174459  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 40225492 - 40225533
Alignment:
Q  201 cttatttccttggcttttctcatatttaaaagggtccatatt 242  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  40225492 cttatttccttggcttttctcatatttattagggtccatatt 40225533  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 5373890 - 5373941
Alignment:
Q  186 cacacatattccatgcttatttccttggcttttctcatatttaaaagggtcc 237  Q
    ||||||| || |||||||||||||||| |||||||| |||||| ||||||||    
T  5373890 cacacatttttcatgcttatttccttgacttttctcttatttataagggtcc 5373941  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 17225256 - 17225299
Alignment:
Q  194 ttccatgcttatttccttggcttttctcatatttaaaagggtcc 237  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||    
T  17225256 ttccatgcttacttccttggcttttctcttatttataagggtcc 17225299  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 8332606 - 8332561
Alignment:
Q  149 aaaatgagagaagaggttagaagaagaatgttgacaacacacatat 194  Q
    ||||||||||||| |||||| |||||||| |||||| |||||||||    
T  8332606 aaaatgagagaagcggttaggagaagaatattgacatcacacatat 8332561  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 42735350 - 42735303
Alignment:
Q  197 catgcttatttccttggcttttctcatatt--taaaagggtccatatt 242  Q
    |||||||||||||||| |||||||||||||  ||| ||||||||||||    
T  42735350 catgcttatttccttgccttttctcatatttataagagggtccatatt 42735303  T

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