View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8578_high_2 (Length: 635)
Name: NF8578_high_2
Description: NF8578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8578_high_2 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 217 - 625
Target Start/End: Complemental strand, 38263462 - 38263070
Alignment:
| Q |
217 |
ttatttatagggccaatgaatatagatttcaaagcatataccattgtatagaaaaactattcttttatcgatagaaacataatttcaaactatgaaaagg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
38263462 |
ttatttatagggccaatgaatatagatttcaaagcatataccattatatagaaaaactattcttttatcgatag----------------tatgaaaagg |
38263379 |
T |
|
| Q |
317 |
agaatannnnnnnacaagtcttattcaaacacatatatcaatgtcaactagaaaggcgataagtgggaatggcagttaaatgatttgccctaggcatagt |
416 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38263378 |
agaatatttttttacaagtcttattcaaacacatatatcaatatcaaccagaaaggcgataagtgggaatggcagttaaatgatttgccctaggcatagt |
38263279 |
T |
|
| Q |
417 |
aagtccaaactcctctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38263278 |
aagtccaaactcctctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatc |
38263179 |
T |
|
| Q |
517 |
acagttaggcctaattgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaacatctatattgctttcttcaa |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38263178 |
acagttaggcctaattgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaacatctatattgctttcttcaa |
38263079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 368 - 625
Target Start/End: Complemental strand, 38260356 - 38260099
Alignment:
| Q |
368 |
aaaggcgataagtgggaatggcagttaaatgatttgccctaggcatagtaagtccaaactcctctgtcatatccaaatcacttggtaacatatgattagg |
467 |
Q |
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|||| ||||||| || |||||| ||| || ||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260356 |
aaagacgataagcagggatggcaattagattattggctctaggcatagtaagaccaaaatcctctgtcatatccaaatcacttggtaacatatgattagg |
38260257 |
T |
|
| Q |
468 |
caatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttaggcctaattgcaatccaggacaaccccttctaccagacccaaat |
567 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| || |||||| |
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| T |
38260256 |
caatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttagacctaattgtaatccaggacaacctcttctacctgagccaaat |
38260157 |
T |
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| Q |
568 |
ggtatgagctgaaaatcacgtcctctaacatctatattgctttcttcaaatctctctg |
625 |
Q |
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|||||||||||||||||||||||| |||||||||||||| || ||||||| ||||||| |
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| T |
38260156 |
ggtatgagctgaaaatcacgtcctttaacatctatattgtttccttcaaacctctctg |
38260099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 38263631 - 38263556
Alignment:
| Q |
19 |
catttgatccctcattttgaagtgctttactgtcttgtcccaccaccataacatatttcagataatttatgtatcc |
94 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
38263631 |
catttgatccctcattttgaagtgctttactgtctcgtcccaccaccgtaacatatttcagataatttatgtatcc |
38263556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 153 - 181
Target Start/End: Complemental strand, 38263526 - 38263498
Alignment:
| Q |
153 |
acagtcaaaaagagtatcttttcgcaact |
181 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38263526 |
acagtcaaaaagagtatcttttcgcaact |
38263498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 7e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 394 - 623
Target Start/End: Complemental strand, 27413677 - 27413448
Alignment:
| Q |
394 |
aaatgatttgccctaggcatagtaagtccaaactcctctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaa |
493 |
Q |
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|||||||| || ||||||||||||| ||||| |||| ||||| |||||||||||||||||||||| |||||| |||||| |||||||||||||||||| |
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| T |
27413677 |
aaatgattggctctaggcatagtaataccaaatgcctcagtcatgtccaaatcacttggtaacatatcattaggtaatttcaaatcaaagcaatgcacaa |
27413578 |
T |
|
| Q |
494 |
gttgagccaccaccaaacgaatcacagttaggcctaattgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctct |
593 |
Q |
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||| |||||||||||||| | || |||||| || || ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| |||||| |
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| T |
27413577 |
tttgggccaccaccaaacgcaccatagttagacccaaatgcaatccaggacaaccccttcttccagagccaaatggtataagctgaaagtcatgtcctcc |
27413478 |
T |
|
| Q |
594 |
aacatctatattgctttcttcaaatctctc |
623 |
Q |
| |
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||||||||| ||| || ||||||||||||| |
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| T |
27413477 |
aacatctatgttgtttccttcaaatctctc |
27413448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 396 - 623
Target Start/End: Complemental strand, 7120 - 6893
Alignment:
| Q |
396 |
atgatttgccctaggcatagtaagtccaaactcctctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagt |
495 |
Q |
| |
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|||||| || ||| ||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7120 |
atgattggctctacgcatagtaacaccaaatgcctctgccatgtccaaatcacttggtaacatatgattaggcaatttaaaatcaaagcaatgcacaagt |
7021 |
T |
|
| Q |
496 |
tgagccaccaccaaacgaatcacagttaggcctaattgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaa |
595 |
Q |
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|| || ||||||||||| | || |||||| || ||||||||||||||||| |||||||| ||||| | ||||||||| || ||||||||| |||||| || |
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| T |
7020 |
tgggctaccaccaaacgcaccatagttagacccaattgcaatccaggacatccccttcttccagagctaaatggtataagttgaaaatcatgtcctccaa |
6921 |
T |
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| Q |
596 |
catctatattgctttcttcaaatctctc |
623 |
Q |
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||||||| ||| || ||||||||||||| |
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| T |
6920 |
catctatgttgtttccttcaaatctctc |
6893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 396 - 623
Target Start/End: Original strand, 6761 - 6988
Alignment:
| Q |
396 |
atgatttgccctaggcatagtaagtccaaactcctctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagt |
495 |
Q |
| |
|
|||||| || ||||||||||||| ||||| |||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
6761 |
atgattggctctaggcatagtaacaccaaatgattctgtcatgtccaagtcacttggtaacatatcattaggcaatttaaaatcaaagcaatgcacaagt |
6860 |
T |
|
| Q |
496 |
tgagccaccaccaaacgaatcacagttaggcctaattgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaa |
595 |
Q |
| |
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|| || ||| ||||||| | || |||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| || ||||| | | |||| || |
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| T |
6861 |
tgggctaccgccaaacgcaccatagttagacctaattgcaatccaggacatccccttcttccagagccaaatggtataagatgaaagtgttgccctccaa |
6960 |
T |
|
| Q |
596 |
catctatattgctttcttcaaatctctc |
623 |
Q |
| |
|
||||||| ||| || ||||||||||||| |
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| T |
6961 |
catctatgttgtttccttcaaatctctc |
6988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 591
Target Start/End: Original strand, 91184 - 91238
Alignment:
| Q |
537 |
tccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcct |
591 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| | |||||||||| ||||| |
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|
| T |
91184 |
tccaggacaaccccttctaccagcaccaaaaggtatcaactgaaaatcatgtcct |
91238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 625
Target Start/End: Complemental strand, 31890781 - 31890693
Alignment:
| Q |
537 |
tccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaacatctatattgctttcttcaaatctctctg |
625 |
Q |
| |
|
||||||||||| |||| |||| | |||||||||||||| ||||||||| |||| | || |||| || || |||||||||||||||| |
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| T |
31890781 |
tccaggacaacttcttcgaccaaaaccaaatggtatgagttgaaaatcatgtccacgaatgtctacatcactatcttcaaatctctctg |
31890693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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