View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8578_high_4 (Length: 514)
Name: NF8578_high_4
Description: NF8578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8578_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 14795372 - 14794876
Alignment:
| Q |
1 |
tagcaacaaaatgattgatataattaagaagatggattatgtctacataatactctcttgtaactccatcatgcacctggcctatactttccttgaggag |
100 |
Q |
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| T |
14795372 |
tagcaacaaaatgattgatataattaagaagatggattatgtctacataatactctcttgtaactccattatgcacctggcctatactttccttgaggag |
14795273 |
T |
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| Q |
101 |
gaccaagctttatttcaaaactcttcatatcatggtgaccttgagcaactggcttctgtactctaacacctccatgtccattattttttgaaaagccacc |
200 |
Q |
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| T |
14795272 |
gaccaagctttatttcaaaactcttcatatcatggtgaccttgagcaactggcttctgtactctaacacctccatgtccattattttttgaaaagccacc |
14795173 |
T |
|
| Q |
201 |
atgtccattattttttggaaagcctccatgtccattattcataggcttagaagctgcaatctttttgtcaaatccaaattcaatatcaacttcttttgga |
300 |
Q |
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| T |
14795172 |
atgtccattattttttggaaagcctccatgtccattattcataggcttagaagctgcaatctttttgtcaaatccaaattcaatatcaacttcttttgga |
14795073 |
T |
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| Q |
301 |
cgtgagtgttggtgattctgctgcttttgatgcttaactggtttctgactgtggcttttgccgttgccgcggcggctgcaaaaccttccaagacaacaag |
400 |
Q |
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| T |
14795072 |
cgtgagtgttggtgattctgctgcttttgatgcttaactggtttctgactgtggcttttgccgttgccgcggcggctgcaaaaccttccaagacaacaag |
14794973 |
T |
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| Q |
401 |
caacagcagagattactattatgatggctaagacaacaaatactgacccaaatgatccattggatgaatggtggtcaggttcaggtggtgcatattg |
497 |
Q |
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| T |
14794972 |
caacagcagagattactattatgatggctaagacaacaaatactgacccaaatgatccattggatgaatggtggtcaggttcaggtggtgcatattg |
14794876 |
T |
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