View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8578_low_12 (Length: 379)
Name: NF8578_low_12
Description: NF8578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8578_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 29424386 - 29424714
Alignment:
| Q |
19 |
aaatccacaacaagaagtcaaaaatcaaaagttgaacatttgcttcattccaacaagtccctatctttttggatttgatatttaacaccattcattcttc |
118 |
Q |
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| T |
29424386 |
aaatccacaacaagaagtcaaaaatcaaaagttgaacatttgcttcattccaacaagtccctatctttttggatttgatatttaacaccattcattattc |
29424485 |
T |
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| Q |
119 |
ccacatcaaaaaccaaagttaaaa--atgagactcggcgttaggaagagtgttttaccttccaaatgttcctttcttaccaatgaaaagtcatctattag |
216 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29424486 |
ccacatcaaaaac-aaagttaaaagaatgagactcggcgttaggaagagtgttttaccttccaaatgttcctttcttaccaatgaaaagtcatctattag |
29424584 |
T |
|
| Q |
217 |
acacactattctccaagtctcactttctaaaccaataaatttatgaacgttttgcatcttgccaaccttgaaaatacaaatagctattttcttatctttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29424585 |
acacactattctccaagtctcactttctaaaccaataaatttatgaacgttttgcatcttgccaaccttgaaaatacaaatagctattttcttatctttt |
29424684 |
T |
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| Q |
317 |
tacttagctatctgcatagtccatcactct |
346 |
Q |
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||||||||||||| |||||||||||||||| |
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| T |
29424685 |
tacttagctatctacatagtccatcactct |
29424714 |
T |
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