View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8578_low_13 (Length: 356)
Name: NF8578_low_13
Description: NF8578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8578_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 180 - 349
Target Start/End: Complemental strand, 35772659 - 35772489
Alignment:
| Q |
180 |
caggacaatatttcggattaaaacatgttcagaatttcatatgcaaaacaaggaacataaaatctaggatgtgggttt-gagtaaatggatgaaaagatg |
278 |
Q |
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| T |
35772659 |
caggacaatatttcggattaaaacatgttcagaatttcatatgcaaaacaaggaacataaaatctaggatgtgggttttgagtaaatggatgaaaagatg |
35772560 |
T |
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| Q |
279 |
aaatggggtgtgaaaaagtttgatacttgggagttcccatgggtcgaatttgtagagatcaatctctgcta |
349 |
Q |
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| T |
35772559 |
aaatggggtgtgaaaaagtttgatacttgggagttcccatgggtcgaatttgtagagatcaatctctgcta |
35772489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 35772833 - 35772693
Alignment:
| Q |
19 |
ttaatataggcttatcagttccagtagctttccaatacccagaagttgcagccctattaggcctggccccatttgggtattttctatcccttgggctgaa |
118 |
Q |
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| T |
35772833 |
ttaatataggcttatcagttccagtagctttccaatacccagaagttgcagccctattaggcctggccccatttgggtattttctatcccttgggctgaa |
35772734 |
T |
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| Q |
119 |
aaagtaccattcttgttccccaaaacttgctttacctatat |
159 |
Q |
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| T |
35772733 |
aaaataccattcttgttccccaaaacttgctttacctatat |
35772693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 32967544 - 32967441
Alignment:
| Q |
29 |
cttatcagttccagtagctttccaatacccagaagttgcagccctattaggcctggccccatttgggtattttctatcccttgggctgaaaaagtaccat |
128 |
Q |
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| T |
32967544 |
cttatcagtgccagtggctttccaataccctgaagcagctgccctgtttggccttgcaccgtttgggtactttctatctctaggactaaaaaagtaccat |
32967445 |
T |
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| Q |
129 |
tctt |
132 |
Q |
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|||| |
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| T |
32967444 |
tctt |
32967441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 33762371 - 33762255
Alignment:
| Q |
26 |
aggcttatcagttccagtagctttccaatacccagaagttgcagccctattaggcctggccccatttgggtattttctatcccttgggctgaaaaagtac |
125 |
Q |
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||||||||| || ||||| || |||||||| ||||||||||||||||| || ||||| || ||||| || || || || |||||||| || || || ||| |
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| T |
33762371 |
aggcttatcggtaccagttgccttccaataaccagaagttgcagccctgtttggcctagctccattcggatacttcctgtcccttggactaaagaaatac |
33762272 |
T |
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| Q |
126 |
cattcttgttccccaaa |
142 |
Q |
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|| ||||| || ||||| |
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| T |
33762271 |
cactcttgctctccaaa |
33762255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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