View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8578_low_16 (Length: 319)
Name: NF8578_low_16
Description: NF8578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8578_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 4 - 303
Target Start/End: Complemental strand, 36439605 - 36439306
Alignment:
| Q |
4 |
gagtttggtgttaaagatccaagggtgatatcaagaatggttttagaagactcgggtcacgtgaggaggctgacgtggcaaccaaacgaaaacagatggt |
103 |
Q |
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| T |
36439605 |
gagtatggtgtgaaagatccaagggtgatatcaagaatggttttagaagactcgggtcacgtgaggaggctgacgtggcaaccaaacgaaaacagatggt |
36439506 |
T |
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| Q |
104 |
ttcaaatatggtttggtccgaaagaggaatgtgataatttcaagcaatgtgggttgaactcgaattgtgacccgtataatgcggaaaaatttgagtgtga |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36439505 |
ttcaaatatggtttggtccgaaagaggaatgtgataatttcaagcaatgtgggttgaactcgaattgtgacccgtataatgcggaaaaatttgagtgtga |
36439406 |
T |
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| Q |
204 |
gtgtttacctggatttgaaccaaagtttgagagggaatggtatttgagagatgggtcgggtgggtgtgtgaggaagtcgaatgtgtccacgtgtcgaaat |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36439405 |
gtgtttacctggatttgaaccaaagtttgagagggaatggtatttgagagatgggtcgggtgggtgtgtgaggaagtcgaatgtgtccacgtgtcgaaat |
36439306 |
T |
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