View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8578_low_17 (Length: 317)
Name: NF8578_low_17
Description: NF8578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8578_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 14276404 - 14276116
Alignment:
| Q |
19 |
aaagtccggccaatagcctctgacagctgcagagcggctgcagttcatttctactatttgtgaaagattatagtttacactatacaatttgtatttaaat |
118 |
Q |
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| T |
14276404 |
aaagtccggccaatagcctctgacagctgcagagcggctgcagttcatttctactatttgtgaaagattatagtttacactatacaatttgtatttaaat |
14276305 |
T |
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| Q |
119 |
aatatggttcaaattataacattactcatgaagcatactacaatacaaggtggcttcgccccccacacactcatgtcgcaacccaacagacctttggact |
218 |
Q |
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| T |
14276304 |
aatacggttcaaattataacattactcatgaagcatactacaatacaaggtggcttcgccccccacacactcgtgtcgcaacccaacagacctttcgact |
14276205 |
T |
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| Q |
219 |
tagcccaatgggaggtctatcttgcttcacttgatcaacctttctacttatcagtaactaagactaagagtcatactcaacgctctctg |
307 |
Q |
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| T |
14276204 |
tggcccaatgggaggtctatcttgcttcacttgatcaacctttctacttatcagtaactaagactaagagtcatactcaacgctctctg |
14276116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 14298096 - 14297820
Alignment:
| Q |
18 |
aaaagtccggccaatagcctctgacagctgcagagcggctgcagttcatttctactatttgtgaaagattatagtttacactatacaatttgtatttaaa |
117 |
Q |
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| T |
14298096 |
aaaagttcggccaatagtctccgactgctgtaaagaggctacagttcatttctactattagtgaaagattagagtttacagtatacaacttgtatttaaa |
14297997 |
T |
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| Q |
118 |
taatatggttcaaattataacattactcatgaagcatactacaatacaaggtggcttcgccccccacacactcatgtcgcaacccaacagacctttggac |
217 |
Q |
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| T |
14297996 |
tactacggttcaaagtagaaaattactcctaaaccata-----atgcaaggaggtttcggcccccacacacccgtgtctcaacccaacaaacctttagac |
14297902 |
T |
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| Q |
218 |
ttagcccaatgggaggtctatcttgcttcacttgatcaacctttctacttatcagtaactaagactaagagtcatactcaac |
299 |
Q |
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| T |
14297901 |
ttagcccagtgggaggtctatctcgcttcgcacgatcaacctttctacttatcggtaactaagaataagagtcatactcaac |
14297820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 14276460 - 14276419
Alignment:
| Q |
19 |
aaagtccggccaatagcctctgacagctgcagagcggctgca |
60 |
Q |
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| T |
14276460 |
aaagtccggccaatagtctctgactgctgcagagcggctgca |
14276419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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