View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8578_low_18 (Length: 317)
Name: NF8578_low_18
Description: NF8578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8578_low_18 |
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| [»] scaffold1191 (1 HSPs) |
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| [»] scaffold0571 (1 HSPs) |
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Alignment Details
Target: scaffold1191 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold1191
Description:
Target: scaffold1191; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 2310 - 2137
Alignment:
| Q |
20 |
ttagtgtccaataataacacattgttatactcaccgataattatttgaaaaaataaataattgaatgtaatcatatgtgttagtgttgtggcataccggt |
119 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
2310 |
ttagtgtccaataataacacattgttatactcactgataattatttgaaaaaataaataattgaatgtaatcatatgtgttagtgttgtggcatgccagt |
2211 |
T |
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| Q |
120 |
gtcggacacgccttctgtaagaaatgtgggtgtgtatgtatatgtgtcaatccttcacagaagcatacttcaag |
193 |
Q |
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|||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
2210 |
gtcggacatgccttctatcagaaatgtgggtgtgtatgtatatgtgtcaatcattcacagatgcatacttcaag |
2137 |
T |
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Target: scaffold0571 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: scaffold0571
Description:
Target: scaffold0571; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 10383 - 10204
Alignment:
| Q |
20 |
ttagtgtccaataataacacattgttatactcaccgataattatttgaaaaaataaataattgaatgtaa---tcatatgtgttagtgttgtggcatacc |
116 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10383 |
ttagtgtccaataataacacattgttatactcactgataattatttgaaaaaataaataattgaatgtaatcatcatatgtgttagtgttgtggca---- |
10288 |
T |
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| Q |
117 |
ggtgtcggacacgccttctgtaagaaatgtgggtgtgtatgtatatgtgtcaatccttcacagaagcatacttcaagttttacttc |
202 |
Q |
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|| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10287 |
--tgccggacacgccttctataagaaatgtggatgtgtatgtatatgtgtcaatccttcaaagaagcatacttcaagttttacttc |
10204 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 1921803 - 1921858
Alignment:
| Q |
56 |
ataattatttgaaaaaat--aaataattgaatgtaatcatatgtgttagtgttgtg |
109 |
Q |
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| T |
1921803 |
ataattatttgaaaaaattcacataattgaatgtaatcacatgtgttattgttgtg |
1921858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 23144130 - 23144098
Alignment:
| Q |
76 |
ataattgaatgtaatcatatgtgttagtgttgt |
108 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
23144130 |
ataattcaatgtaatcatatgtgttagtgttgt |
23144098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 23948398 - 23948449
Alignment:
| Q |
55 |
gataattatttgaaaaaataaat-aattgaatgtaatcatatgtgttagtgt |
105 |
Q |
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|||||| |||||||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
23948398 |
gataataatttgaaaaaatcaattaattgaatgtaatcatatgtgtcagtgt |
23948449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 12668019 - 12667969
Alignment:
| Q |
57 |
taattatttgaaaaaataa-ataattgaatgtaatcatatgtgttagtgtt |
106 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
12668019 |
taattatttgaaaaaatggtataattgaatgtaatcacatgtgttagtgtt |
12667969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 38749620 - 38749561
Alignment:
| Q |
51 |
caccgataattatttgaaaaaat-aaataattgaatgtaatcatatgtgttagtgttgtg |
109 |
Q |
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| T |
38749620 |
caccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtg |
38749561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 18513298 - 18513239
Alignment:
| Q |
51 |
caccgataattatttgaaaaaataa-ataattgaatgtaatcatatgtgttagtgttgtg |
109 |
Q |
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|||||||||| |||||| ||||| | |||||| ||||||||||||||||| ||||||||| |
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| T |
18513298 |
caccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtg |
18513239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 49345735 - 49345773
Alignment:
| Q |
56 |
ataattatttgaaaaaataa-ataattgaatgtaatcat |
93 |
Q |
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| T |
49345735 |
ataattatttgaaaaaataacataattgaatgtaatcat |
49345773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 20119949 - 20120002
Alignment:
| Q |
53 |
ccgataattatttgaaaaaat-aaataattgaatgtaatcatatgtgttagtgt |
105 |
Q |
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|||||||| |||||| ||||| |||||||| |||||||||| |||||||||||| |
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| T |
20119949 |
ccgataataatttgagaaaatgaaataatttaatgtaatcacatgtgttagtgt |
20120002 |
T |
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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 24445438 - 24445389
Alignment:
| Q |
51 |
caccgataattatttgaaaaaataaataattgaatgtaatcatatgtgtt |
100 |
Q |
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|||||||||| |||||||||| || |||||||||||||||| ||||||| |
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| T |
24445438 |
caccgataataatttgaaaaataaagtaattgaatgtaatcacatgtgtt |
24445389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 35871237 - 35871188
Alignment:
| Q |
51 |
caccgataattatttgaaaaaataaataattgaatgtaatcatatgtgtt |
100 |
Q |
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|||||||||| |||||||||| || |||||||||||||||| ||||||| |
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| T |
35871237 |
caccgataataatttgaaaaataaagtaattgaatgtaatcacatgtgtt |
35871188 |
T |
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