View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8578_low_3 (Length: 539)
Name: NF8578_low_3
Description: NF8578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8578_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 202 - 524
Target Start/End: Original strand, 26708085 - 26708407
Alignment:
| Q |
202 |
ttgacaaaaactacactttaaagtttttcacaaaataacagtttcaccatgttgaacgcttataagatgaacctaaaaacattaaaataggaaccttacc |
301 |
Q |
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| T |
26708085 |
ttgacaaaaactacactttaaaatttttcacaaaataacagtttcatcatattgaacgcttataacatgaacctaaaaacattaaaatagaaaccttacc |
26708184 |
T |
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| Q |
302 |
tttttctaaaaaatgtaaaacaaaattgatgaataggcacaaggtatatcaaaaatcctacacctacattgttagatatagtcaaagacaggatttgata |
401 |
Q |
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| T |
26708185 |
tttttctaaaaaatgtaaaacaaaattgatgaataggcacaaggtataccaaaaatcctacacctacattgttagatatagtcaaagagaggatttgata |
26708284 |
T |
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| Q |
402 |
acaaagaattgagaatgatacaaatatggcgtcaagaccactgagcactctgaatattgaagcgacaaatttctctaaaaaggtataatttttgaaggga |
501 |
Q |
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| T |
26708285 |
acaaagaattgaaaattattcaaatatggcgtcaagaccactgagcactctgaatattgaagcgacaaatttatctaaaaaggtataatttttgaaggga |
26708384 |
T |
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| Q |
502 |
caattttgaaaagatgcaaatga |
524 |
Q |
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| T |
26708385 |
caattttgaaaagatgcaaatga |
26708407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 24 - 171
Target Start/End: Original strand, 26707847 - 26707994
Alignment:
| Q |
24 |
tattgaaaacgaatatatatttgacattaattgtttgcacacaatcaatggagtagatggaagagagataataatgcaaatattgttttatttgaaattg |
123 |
Q |
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| T |
26707847 |
tattgaaaacgaatatatatttgacattgattgtttgcacacaatcaattgagtagatggaagagagataataatgcaaatattgttttatttgaaattg |
26707946 |
T |
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| Q |
124 |
gnnnnnnnaaagatactattataatctatatttgaattaaaagtgaat |
171 |
Q |
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| T |
26707947 |
gtttttttaacgatactattataatctatatttgaattaaaagtgaat |
26707994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 26706299 - 26706205
Alignment:
| Q |
26 |
ttgaaaacgaatatatatttgacattaattgtttgcacacaatcaatggagtagatggaagagagataataatgcaaatattgttttatttgaaa |
120 |
Q |
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| T |
26706299 |
ttgaaaatgaatatattttttacattgattatttgcacacaatcaatgagttagacggaagagaggtaagaatggaaatattcttttatttgaaa |
26706205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 18443787 - 18443714
Alignment:
| Q |
37 |
tatatatttgacattaattgtttgcacacaatcaatggagtagatggaagagagataataatgcaaatattgtt |
110 |
Q |
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| T |
18443787 |
tatatattcgatattgattgtttgcacacaatcaatagtgtagatggaagagaggtaagaatgcaaattttgtt |
18443714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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