View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8578_low_7 (Length: 428)
Name: NF8578_low_7
Description: NF8578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8578_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 421133 - 421379
Alignment:
| Q |
20 |
aacaagaagaatgagattattagaagtaaaatatataaaagtcattctttatttttggaggtgtaaatagcaataagatagccctaacctaatttgctga |
119 |
Q |
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| T |
421133 |
aacaagaagaatgagattattagaagtaaaatatataaaagtcattctttatttttggaggtgtaaatagcaataagatagccctaacctaatttgctga |
421232 |
T |
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| Q |
120 |
aaagttatggttgggnnnnnnnnnnnnctttatctatccatccatctatctaactcatttcatttgattcagagaaaacagtgtgtaatgtaatggcgtg |
219 |
Q |
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| T |
421233 |
aaagttatggttggg----gagagagactttatctatccatccatctatctaactcatttcatttgattcagagaaaacagtgtgtaatgtaatggcgtg |
421328 |
T |
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| Q |
220 |
tacattaagtctattatcacacacactctctctctcactatcactataactat |
272 |
Q |
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| T |
421329 |
tacattaagtctattatcacacaca--ctctctctcactataactataactat |
421379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 333 - 416
Target Start/End: Original strand, 421436 - 421519
Alignment:
| Q |
333 |
gctatgctaaatgggttgtgcgcttaaaagatctcactttcaccctaaaaaagctgaacacttttgtctccatctcttcatctc |
416 |
Q |
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| T |
421436 |
gctatgctaaatgggttgtgcgcttaaaagatctcactttcaccctaaaaaagctgaacacttttgtctccatctcctcatctc |
421519 |
T |
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