View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8578_low_9 (Length: 420)

Name: NF8578_low_9
Description: NF8578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8578_low_9
NF8578_low_9
[»] chr4 (40 HSPs)
chr4 (79-371)||(53182147-53182439)
chr4 (73-407)||(33606061-33606410)
chr4 (89-332)||(36657591-36657848)
chr4 (75-371)||(34435250-34435554)
chr4 (89-293)||(28446386-28446590)
chr4 (195-293)||(16172705-16172803)
chr4 (1-51)||(2212920-2212970)
chr4 (1-51)||(46915114-46915164)
chr4 (198-400)||(8993751-8993968)
chr4 (198-400)||(13112529-13112746)
chr4 (198-400)||(46915330-46915547)
chr4 (1-51)||(33606433-33606483)
chr4 (1-51)||(36657885-36657935)
chr4 (1-51)||(53182068-53182118)
chr4 (198-287)||(2213136-2213225)
chr4 (2-51)||(3530901-3530950)
chr4 (2-51)||(3615890-3615939)
chr4 (2-51)||(8994134-8994183)
chr4 (2-51)||(13112912-13112961)
chr4 (89-162)||(16172578-16172651)
chr4 (198-400)||(3616105-3616322)
chr4 (1-49)||(34435174-34435222)
chr4 (353-401)||(53182382-53182430)
chr4 (2-51)||(16172493-16172542)
chr4 (321-371)||(2213435-2213485)
chr4 (290-400)||(3531223-3531333)
chr4 (321-371)||(46915630-46915680)
chr4 (290-371)||(16172815-16172896)
chr4 (90-162)||(2213007-2213079)
chr4 (90-162)||(3530987-3531059)
chr4 (90-162)||(3615976-3616048)
chr4 (90-162)||(8994025-8994097)
chr4 (90-162)||(13112803-13112875)
chr4 (90-162)||(46915201-46915273)
chr4 (8-51)||(28446625-28446668)
chr4 (290-371)||(2213243-2213323)
chr4 (198-287)||(3531116-3531205)
chr4 (314-371)||(33606058-33606115)
chr4 (360-407)||(2213435-2213482)
chr4 (360-407)||(46915630-46915677)
[»] chr1 (39 HSPs)
chr1 (75-371)||(33166299-33166610)
chr1 (75-371)||(47298263-47298574)
chr1 (1-371)||(17676951-17677337)
chr1 (75-377)||(38837403-38837717)
chr1 (89-371)||(17785358-17785655)
chr1 (83-365)||(51522343-51522640)
chr1 (195-402)||(8470311-8470533)
chr1 (84-363)||(18318491-18318805)
chr1 (195-287)||(48406521-48406613)
chr1 (198-400)||(31470251-31470468)
chr1 (198-400)||(45241103-45241320)
chr1 (1-51)||(17785691-17785741)
chr1 (1-51)||(31470634-31470684)
chr1 (1-51)||(45241486-45241536)
chr1 (198-400)||(48386036-48386253)
chr1 (1-51)||(33166635-33166685)
chr1 (2-51)||(2475765-2475814)
chr1 (2-51)||(48385821-48385870)
chr1 (89-162)||(48406667-48406740)
chr1 (198-400)||(2475980-2476197)
chr1 (1-51)||(38837328-38837378)
chr1 (2-51)||(48406776-48406825)
chr1 (1-48)||(8470699-8470746)
chr1 (8-51)||(18318418-18318461)
chr1 (321-371)||(31469999-31470049)
chr1 (314-407)||(8470267-8470360)
chr1 (90-162)||(2475851-2475923)
chr1 (90-162)||(31470525-31470597)
chr1 (90-162)||(45241377-45241449)
chr1 (90-162)||(48385907-48385979)
chr1 (8-48)||(51522673-51522713)
chr1 (1-51)||(47298189-47298239)
chr1 (101-162)||(8470587-8470648)
chr1 (290-371)||(48406422-48406503)
chr1 (360-407)||(31470002-31470049)
chr1 (353-407)||(33166302-33166356)
chr1 (353-407)||(47298517-47298571)
chr1 (314-371)||(8470264-8470321)
chr1 (353-402)||(18318756-18318805)
[»] chr3 (63 HSPs)
chr3 (73-258)||(33935415-33935600)
chr3 (1-234)||(51429136-51429370)
chr3 (1-371)||(26157741-26158127)
chr3 (89-370)||(33750676-33750974)
chr3 (89-367)||(50019115-50019408)
chr3 (253-371)||(51429024-51429141)
chr3 (75-196)||(33188784-33188905)
chr3 (198-407)||(47146329-47146553)
chr3 (195-287)||(42563103-42563195)
chr3 (198-400)||(17468479-17468696)
chr3 (198-400)||(25788561-25788778)
chr3 (198-400)||(25830518-25830735)
chr3 (198-400)||(42599216-42599433)
chr3 (1-51)||(17468862-17468912)
chr3 (1-51)||(25788345-25788395)
chr3 (1-51)||(25830302-25830352)
chr3 (1-51)||(33751010-33751060)
chr3 (1-51)||(42599000-42599050)
chr3 (198-400)||(10425513-10425730)
chr3 (198-400)||(30416317-30416534)
chr3 (195-273)||(21227304-21227382)
chr3 (293-371)||(33188922-33189000)
chr3 (5-51)||(33935623-33935669)
chr3 (1-51)||(47146719-47146769)
chr3 (2-51)||(6045974-6046023)
chr3 (2-51)||(10425298-10425347)
chr3 (2-51)||(30416102-30416151)
chr3 (2-51)||(42563358-42563407)
chr3 (1-51)||(30689466-30689516)
chr3 (89-135)||(30689551-30689597)
chr3 (1-45)||(33188709-33188753)
chr3 (198-400)||(6046189-6046406)
chr3 (12-51)||(21230179-21230218)
chr3 (1-44)||(50019451-50019494)
chr3 (195-273)||(21230380-21230458)
chr3 (321-371)||(25788779-25788829)
chr3 (321-371)||(25788926-25788976)
chr3 (321-371)||(25830736-25830786)
chr3 (321-371)||(25830883-25830933)
chr3 (321-371)||(47146039-47146089)
chr3 (321-371)||(47146205-47146255)
chr3 (90-162)||(6046060-6046132)
chr3 (90-162)||(17468753-17468825)
chr3 (90-162)||(25788432-25788504)
chr3 (90-162)||(25830389-25830461)
chr3 (90-162)||(30416188-30416260)
chr3 (90-162)||(42563249-42563321)
chr3 (90-162)||(42599087-42599159)
chr3 (90-162)||(47146610-47146682)
chr3 (12-47)||(21227549-21227584)
chr3 (316-407)||(25788733-25788826)
chr3 (316-407)||(25788880-25788973)
chr3 (316-407)||(25830690-25830783)
chr3 (316-407)||(25830837-25830930)
chr3 (353-407)||(26158070-26158124)
chr3 (325-407)||(42562775-42562857)
chr3 (353-407)||(51429027-51429080)
chr3 (90-162)||(10425384-10425456)
chr3 (314-402)||(42562741-42562829)
chr3 (293-360)||(21227202-21227269)
chr3 (290-369)||(42563006-42563085)
chr3 (360-407)||(47146042-47146089)
chr3 (360-407)||(47146208-47146255)
[»] scaffold0004 (3 HSPs)
scaffold0004 (1-407)||(104851-105273)
scaffold0004 (314-407)||(104812-104905)
scaffold0004 (321-371)||(104809-104859)
[»] chr7 (21 HSPs)
chr7 (73-407)||(32127957-32128306)
chr7 (1-407)||(26814141-26814563)
chr7 (195-371)||(22658941-22659132)
chr7 (198-400)||(22193279-22193496)
chr7 (1-51)||(22193662-22193712)
chr7 (198-400)||(36520495-36520712)
chr7 (314-407)||(32128252-32128345)
chr7 (2-51)||(36520877-36520926)
chr7 (90-162)||(22659186-22659258)
chr7 (2-44)||(22659302-22659344)
chr7 (1-51)||(32127884-32127934)
chr7 (321-371)||(22193081-22193131)
chr7 (321-371)||(22193228-22193278)
chr7 (90-162)||(22193553-22193625)
chr7 (316-407)||(22193084-22193177)
chr7 (316-407)||(22193231-22193324)
chr7 (90-162)||(36520769-36520841)
chr7 (321-371)||(26814138-26814188)
chr7 (321-371)||(32128298-32128348)
chr7 (316-407)||(22658579-22658673)
chr7 (314-402)||(22658626-22658714)
[»] chr6 (37 HSPs)
chr6 (1-407)||(24917254-24917663)
chr6 (75-402)||(18641268-18641610)
chr6 (195-287)||(8221303-8221395)
chr6 (195-287)||(24114234-24114326)
chr6 (198-400)||(633733-633950)
chr6 (198-400)||(6378283-6378500)
chr6 (198-400)||(17959151-17959368)
chr6 (1-51)||(634116-634166)
chr6 (1-51)||(6378067-6378117)
chr6 (1-51)||(8221552-8221602)
chr6 (1-51)||(17958935-17958985)
chr6 (198-400)||(34840474-34840691)
chr6 (1-51)||(18641635-18641685)
chr6 (314-407)||(8220870-8220963)
chr6 (89-158)||(8221453-8221522)
chr6 (314-371)||(24917609-24917666)
chr6 (2-51)||(34840857-34840906)
chr6 (8-48)||(24114488-24114528)
chr6 (84-195)||(24114345-24114456)
chr6 (321-371)||(633388-633438)
chr6 (321-371)||(633535-633585)
chr6 (321-371)||(633682-633732)
chr6 (321-371)||(6378501-6378551)
chr6 (321-371)||(6378648-6378698)
chr6 (314-371)||(8220867-8220924)
chr6 (90-162)||(634007-634079)
chr6 (90-162)||(6378154-6378226)
chr6 (90-162)||(17959022-17959094)
chr6 (90-162)||(34840748-34840820)
chr6 (316-407)||(633391-633484)
chr6 (316-407)||(633538-633631)
chr6 (316-407)||(633685-633778)
chr6 (316-407)||(6378455-6378548)
chr6 (316-407)||(6378602-6378695)
chr6 (290-332)||(8221243-8221285)
chr6 (314-407)||(8220909-8221002)
chr6 (350-407)||(24114153-24114210)
[»] scaffold1240 (2 HSPs)
scaffold1240 (89-380)||(439-745)
scaffold1240 (1-51)||(353-403)
[»] chr8 (18 HSPs)
chr8 (75-371)||(30530341-30530652)
chr8 (1-371)||(17743686-17744068)
chr8 (195-371)||(15055641-15055832)
chr8 (195-371)||(27359167-27359358)
chr8 (195-371)||(27368524-27368715)
chr8 (2-51)||(15055995-15056044)
chr8 (198-400)||(1956140-1956357)
chr8 (89-195)||(27359379-27359485)
chr8 (89-195)||(27368736-27368842)
chr8 (1-51)||(35100843-35100893)
chr8 (2-51)||(1955925-1955974)
chr8 (1-45)||(30530267-30530311)
chr8 (90-162)||(15055887-15055959)
chr8 (1-51)||(27359511-27359561)
chr8 (1-51)||(27368868-27368918)
chr8 (90-162)||(1956011-1956083)
chr8 (90-128)||(35100768-35100806)
chr8 (350-399)||(17743697-17743746)
[»] chr2 (28 HSPs)
chr2 (84-365)||(31185960-31186255)
chr2 (89-293)||(4278259-4278461)
chr2 (84-377)||(31205674-31205985)
chr2 (208-371)||(40879701-40879877)
chr2 (198-400)||(9073773-9073990)
chr2 (198-400)||(12856942-12857159)
chr2 (198-400)||(30820470-30820687)
chr2 (198-371)||(8854091-8854279)
chr2 (1-51)||(8854445-8854495)
chr2 (1-51)||(9073557-9073607)
chr2 (1-51)||(12857325-12857375)
chr2 (1-51)||(30820254-30820304)
chr2 (198-400)||(7586390-7586607)
chr2 (1-51)||(31205594-31205644)
chr2 (2-51)||(7586175-7586224)
chr2 (4-51)||(31185882-31185929)
chr2 (321-371)||(8853929-8853979)
chr2 (321-371)||(12856891-12856941)
chr2 (90-162)||(7586261-7586333)
chr2 (90-162)||(8854336-8854408)
chr2 (90-162)||(12857216-12857288)
chr2 (90-162)||(30820341-30820413)
chr2 (316-407)||(12856894-12856987)
chr2 (350-402)||(31186202-31186253)
chr2 (360-407)||(8853932-8853979)
chr2 (321-407)||(9073991-9074077)
chr2 (353-407)||(40879820-40879874)
chr2 (314-370)||(9074023-9074079)
[»] chr5 (20 HSPs)
chr5 (83-194)||(34710303-34710414)
chr5 (195-371)||(29617379-29617570)
chr5 (195-371)||(30646715-30646905)
chr5 (198-400)||(4579072-4579289)
chr5 (1-51)||(4579455-4579505)
chr5 (1-51)||(34710449-34710499)
chr5 (198-400)||(27944619-27944836)
chr5 (5-51)||(30646506-30646552)
chr5 (2-51)||(27945002-27945051)
chr5 (2-51)||(29617167-29617216)
chr5 (89-162)||(30646588-30646661)
chr5 (198-400)||(32974211-32974428)
chr5 (198-371)||(40890819-40891007)
chr5 (2-51)||(32973996-32974045)
chr5 (2-51)||(40891172-40891221)
chr5 (90-162)||(29617253-29617325)
chr5 (90-162)||(27944893-27944965)
chr5 (90-162)||(32974082-32974154)
chr5 (90-162)||(4579346-4579418)
chr5 (90-162)||(40891064-40891136)
[»] scaffold0658 (3 HSPs)
scaffold0658 (84-200)||(6842-6958)
scaffold0658 (290-367)||(7045-7121)
scaffold0658 (1-51)||(6762-6812)
[»] scaffold0007 (2 HSPs)
scaffold0007 (195-273)||(167191-167269)
scaffold0007 (8-42)||(166986-167020)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 79 - 371
Target Start/End: Original strand, 53182147 - 53182439
Alignment:
Q  79 acgctgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaaca 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  53182147 acgctgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggataaagagattgaacatttgaaagactacaccaaggtgcaaca 53182246  T
Q  179 ggagaaaaacagattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgt 278  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  53182247 ggagaaaaacagattgacgaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgaccggaaaaaagagctgttggaaaacttggtgcgt 53182346  T
Q  279 gagctgttttgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  53182347 gagctgttttgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctaggtcccaatgtttactttaataattgtcagtattgtctag 53182439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 73 - 407
Target Start/End: Complemental strand, 33606410 - 33606061
Alignment:
Q  73 gtaaggacgctgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggt 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||| |||||||||| |||   |||    
T  33606410 gtaaggacgctgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagttcacgttggt 33606311  T
Q  173 gcaacaggagaaaaacagattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttg 272  Q
    |||||||||||||||||||||||||||| ||||| | ||| ||||||||||||| ||||||||||| ||||||| |||||||||| |||||||| | |||    
T  33606310 gcaacaggagaaaaacagattgaagaaattgaaactatatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagagttgttggaagagttg 33606211  T
Q  273 gtgcgtgagctgttttg---------------aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattg 357  Q
    | |||||||||||||||               ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  33606210 gagcgtgagctgttttgaaattaatttcaatcaaatatttgttggtattcggtcaaaattgtcagtgttgtctagttcccaatgtttactttaataattg 33606111  T
Q  358 tcagtgttgtctaggtct-caatgtttactttaataattgtcagtgatgtc 407  Q
    | ||||||||||| |||| ||||||||||||||||||||| ||||| ||||    
T  33606110 ttagtgttgtcta-gtctccaatgtttactttaataattgacagtgttgtc 33606061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 89 - 332
Target Start/End: Complemental strand, 36657848 - 36657591
Alignment:
Q  89 cttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaac 188  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||    |||||||||||| |||||||||||||||  ||||||| |||||||||||    
T  36657848 cttggaggaggtggaaaaggagtggattgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagtacaccttggtgcaaaaggagaaaaac 36657749  T
Q  189 agattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt- 287  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||||||  |||||| ||||||| ||||||| |||||||||| |||||||||||||     
T  36657748 agattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcaatgacc-gaaaaaatagctgttagaaaacttggagcgtgagctgtttg 36657650  T
Q  288 --------------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctag 332  Q
                  | ||||||||||||||||| |||||||||||||||||||||||||    
T  36657649 aaaattaatttcaatcaaatatttgtttgtatttggtcaaaattgtcagtgttgtctag 36657591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 75 - 371
Target Start/End: Original strand, 34435250 - 34435554
Alignment:
Q  75 aaggacgctgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgc 174  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||    |||||||||||| |||||||||| || |  |||||    
T  34435250 aaggacgctgctgccttcgaggaggtggaaaaggagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagttcaacttggtgc 34435349  T
Q  175 aacaggagaaaaacagattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggt 274  Q
    |||| |||||||||| |||||||||||||||| ||||| ||||||||||||       |||||| || |||| |||||||||| |||||||||| ||||     
T  34435350 aacaagagaaaaacaaattgaagaaaatgaaattgtatgtaaagttaagtt-------gcatctcgacgaccggaaaaaagagttgttggaaaagttgga 34435442  T
Q  275 gcgtgagctgttttg---------------aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtc 359  Q
    ||||||||| |||||               |||||||||||||||||||||||||||||||| ||||||||||  || | ||||| ||| |||||||||     
T  34435443 gcgtgagctattttgaaattaatttcaatcaaatatttgtttgtattcggtcaaaattgtcaatgttgtctagtccctagtgtttgctttaataattgtt 34435542  T
Q  360 agtgttgtctag 371  Q
    ||||||||||||    
T  34435543 agtgttgtctag 34435554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 28446590 - 28446386
Alignment:
Q  89 cttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaac 188  Q
    ||||||||||| |||||||||||||||| |||||||| ||||||| |    |||||||||||| |||||||||| ||||  |||||||||||||||||||    
T  28446590 cttggaggagggggaaaaggagtgggttgaattcaaacaaatcaaagtgcaagagattgaacaattgaaagagttcaccttggtgcaacaggagaaaaac 28446491  T
Q  189 agattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgtttt 288  Q
    | ||| |||||||||||| ||||| ||||||||||| | |||||||||||  |||||| ||| |||||| |||||||||| ||||||  |||| ||||||    
T  28446490 aaattaaagaaaatgaaattgtatgtaaagttaagtcccgaagagcatctcaatgaccggaagaaagagatgttggaaaagttggtgtttgagttgtttt 28446391  T
Q  289 gaaat 293  Q
    |||||    
T  28446390 gaaat 28446386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 195 - 293
Target Start/End: Original strand, 16172705 - 16172803
Alignment:
Q  195 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttttgaaat 293  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||| ||| |||| ||||||||||||| |||||    
T  16172705 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaagagctgttgggaaagttggagcgtgagctgtttggaaat 16172803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 2212920 - 2212970
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2212920 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 2212970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 46915114 - 46915164
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46915114 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 46915164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 400
Target Start/End: Complemental strand, 8993968 - 8993751
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  8993968 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 8993869  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  8993868 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 8993769  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  8993768 tgctttaataattatcag 8993751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 400
Target Start/End: Complemental strand, 13112746 - 13112529
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  13112746 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 13112647  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  13112646 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 13112547  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  13112546 tgctttaataattatcag 13112529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 46915330 - 46915547
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||| | ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  46915330 aaaatgaaaatgtatctaaagttaagggacgaagagcatgtcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 46915429  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  46915430 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 46915529  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  46915530 tgctttaataattatcag 46915547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33606483 - 33606433
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33606483 cacgaggactctgtaggatctagtgctcgtccaatggatagggaggcagct 33606433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36657935 - 36657885
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36657935 cacgaggactctgtaggatctagtgctcgtccaatgggtaaggaggcagct 36657885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 53182068 - 53182118
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  53182068 cacgaggactctgtaggatctagtgctcgtccaatggatagggaggcagct 53182118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 2213136 - 2213225
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||    
T  2213136 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgttt 2213225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 3530901 - 3530950
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3530901 acgaggactctgtaggatctagtgctcgtccaatgggtagggatgcagct 3530950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 3615890 - 3615939
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3615890 acgaggactctgtaggatctagtgctcgtccaatgggtagggatgcagct 3615939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 8994183 - 8994134
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8994183 acgaggactctgtaggatctagtgctcgtccaatgggtagggatgcagct 8994134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 13112961 - 13112912
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13112961 acgaggactctgtaggatctagtgctcgtccaatgggtagggatgcagct 13112912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 16172578 - 16172651
Alignment:
Q  89 cttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    ||||||| |||||||||||||||||||||||||||||||| | |||||   |||||||||||| ||||||||||    
T  16172578 cttggagaaggtggaaaaggagtgggttcaattcaaagaattaaaggagcaagagattgaacaattgaaagagt 16172651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 3616105 - 3616322
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| ||||||| |||||              
T  3616105 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagttgtttgaaaattaat 3616204  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaa-tgtttacttcaataattgtcagtgttgtctaggtctcaatgt 381  Q
         | |||||||||||||||||| ||||| ||| |||||||||||||| |||||| ||||| ||| |||| |||||||||||||||||  |  | |||    
T  3616205 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctag-tcccaactgtttgctttaatatttgtcagtgttgtctagtccgtagtgt 3616303  T
Q  382 ttactttaataattgtcag 400  Q
    || ||||||||||| ||||    
T  3616304 ttgctttaataattatcag 3616322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34435174 - 34435222
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcag 49  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34435174 cacgaggactctgtaggatctagtactcgtccaatgggtagggaggcag 34435222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 53182382 - 53182430
Alignment:
Q  353 aattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagt 401  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  53182382 aattgtcagtgttgtctaggtcccaatgtttactttaataattgtcagt 53182430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 16172493 - 16172542
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  16172493 acgaggactctgtaggatctagtgctcgttcaatgggaagggaggcagct 16172542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 2213435 - 2213485
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  2213435 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 2213485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 400
Target Start/End: Original strand, 3531223 - 3531333
Alignment:
Q  290 aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtttacttta 389  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||   | | ||||| ||| |||| |||||||||||||||||  |  | ||||| |||||    
T  3531223 aaatatttgtttgtattcagtcaacattatcagtgttgtctagtctcgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtttgcttta 3531322  T
Q  390 ataattgtcag 400  Q
    |||||| ||||    
T  3531323 ataattatcag 3531333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 46915630 - 46915680
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  46915630 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 46915680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 371
Target Start/End: Original strand, 16172815 - 16172896
Alignment:
Q  290 aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    |||||||||||||||||| ||||||||| |||||||| |||||  || | ||||| ||| |||| |||||||||||| ||||    
T  16172815 aaatatttgtttgtattcagtcaaaattatcagtgttatctagtcccgagtgtttgctttaatatttgtcagtgttgcctag 16172896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 2213007 - 2213079
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  2213007 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 2213079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 3530987 - 3531059
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  3530987 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 3531059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 3615976 - 3616048
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  3615976 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 3616048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 8994097 - 8994025
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  8994097 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 8994025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 13112875 - 13112803
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  13112875 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 13112803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 46915201 - 46915273
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  46915201 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 46915273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 28446668 - 28446625
Alignment:
Q  8 actctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||    
T  28446668 actctataggatctagtgctcgtccaatgggtaggaaggcagct 28446625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 371
Target Start/End: Original strand, 2213243 - 2213323
Alignment:
Q  290 aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||| ||||||||||    
T  2213243 aaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtca-tgttgtctag 2213323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 3531116 - 3531205
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt 287  Q
    |||||||||||||||||||||||||     ||||||||||| ||||||| ||| || ||||||||||  || |||| || ||||||||||    
T  3531116 aaaatgaaaatgtatctaaagttaaaggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcatgagctgttt 3531205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 33606115 - 33606058
Alignment:
Q  314 aattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    |||||| ||||||||||||   ||||||||||||| |||||||| |||||||||||||    
T  33606115 aattgttagtgttgtctagtctccaatgtttactttaataattgacagtgttgtctag 33606058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 407
Target Start/End: Original strand, 2213435 - 2213482
Alignment:
Q  360 agtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    ||||||||||||  | ||||||||||||||||||||||||||| ||||    
T  2213435 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 2213482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 407
Target Start/End: Original strand, 46915630 - 46915677
Alignment:
Q  360 agtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    ||||||||||||  | ||||||||||||||||||||||||||| ||||    
T  46915630 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 46915677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 75 - 371
Target Start/End: Complemental strand, 33166610 - 33166299
Alignment:
Q  75 aaggacgctgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgc 174  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    |||||||||||| |||||||||| ||||  |||||    
T  33166610 aaggacgctgctggcttggaggaggtggaaagggagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagttcaccttggtgc 33166511  T
Q  175 aacaggagaaaaacagattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggt 274  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||| ||||||||||||||||||||| ||||     
T  33166510 aacaggagaaaaacagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagaatcttgatgaccggaaaaaagagctgttggaaaagttgga 33166411  T
Q  275 gcgtgagctgttttg---------------aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtc 359  Q
    |||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||| ||||||||||    
T  33166410 gcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagtctccaatttttactttaataattgtc 33166311  T
Q  360 agtgttgtctag 371  Q
    ||||||||||||    
T  33166310 agtgttgtctag 33166299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 75 - 371
Target Start/End: Original strand, 47298263 - 47298574
Alignment:
Q  75 aaggacgctgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgc 174  Q
    |||||| |||||| ||||||||| ||||||||||||||| || ||||||||||||||||||    |||||||||||| |||||||||| ||||  |||||    
T  47298263 aaggacactgctgccttggaggaagtggaaaaggagtggattgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagttcaccttggtgc 47298362  T
Q  175 aacaggagaaaaacagattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggt 274  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||| ||||||| ||||||||||||||||||||| ||||     
T  47298363 aacaggagaaaaacagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagtatctcgatgaccggaaaaaagagctgttggaaaagttgga 47298462  T
Q  275 gcgtgagctgttttga---------------aatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtc 359  Q
    ||||||||||||||||               |||||||||||||||||||||||||||||||||||||| |||  |||||||||| ||| ||||||||||    
T  47298463 gcgtgagctgttttgaaattaattgcaatccaatatttgtttgtattcggtcaaaattgtcagtgttgtttagaccccaatgtttgctttaataattgtc 47298562  T
Q  360 agtgttgtctag 371  Q
    ||||||||||||    
T  47298563 agtgttgtctag 47298574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 17676951 - 17677337
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagctnnnnnnnnnnnnnnnnnnnnngtaaggacgctgctggcttggaggaggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                     ||||||||| || || ||||||||| ||    
T  17676951 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagctaaaaaaaaggtaaaaagaaaagtaaggacgttgttgccttggaggaagt 17677050  T
Q  101 ggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaacagattgaagaaa 200  Q
    |||||||||||||||| ||||||||||||||||||    |||||||||||| |||||||||| ||||  |||||||||||||||||||||| ||||||||    
T  17677051 ggaaaaggagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagttcaccttggtgcaacaggagaaaaacagaatgaagaaa 17677150  T
Q  201 atgaaaatgtatctaaagttaagttctgaagagcatcttgatgacc-tgaaaaaagagctgttggaaaacttggtgcgtgagctgttttga--------- 290  Q
    |||||| ||||| ||||||||||||| ||||||||||| |||||||  ||||||||||||||||||||| |||| ||||||||| ||||||             
T  17677151 atgaaactgtatgtaaagttaagttccgaagagcatctcgatgaccgggaaaaaagagctgttggaaaagttggagcgtgagctattttgaaattaattg 17677250  T
Q  291 ------aatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
          ||||||||||||||||||||||||||||||||||||||||||  |  | |||||  || ||||||||||| ||||||||||    
T  17677251 caatccaatatttgtttgtattcggtcaaaattgtcagtgttgtctagaccttagtgtttgttttaataattgtcaatgttgtctag 17677337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 75 - 377
Target Start/End: Original strand, 38837403 - 38837717
Alignment:
Q  75 aaggacgctgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgc 174  Q
    ||||||||||||  ||||||||| ||| |||||||||||||| |||||||||||||||| |    |||||||||||| |||||| ||| ||||  |||||    
T  38837403 aaggacgctgcttccttggaggaagtgaaaaaggagtgggttgaattcaaagaaatcaaagtacaagagattgaacaattgaaatagttcaccttggtgc 38837502  T
Q  175 aacaggagaaaaacagattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggt 274  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||||||| ||||||| |||||||||| |||||||||| ||||     
T  38837503 aacaggagaaaaacagattgaagaaaatgaaactgtatgtaaagttaaattccgaagagcatctcgatgaccggaaaaaagagttgttggaaaagttgga 38837602  T
Q  275 gcgtgagctgttttga------------aatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagt 362  Q
    ||||||||||||||||            |||||||||||||||||||||||||||||| |||||||| ||  | || ||||| ||| |||||||||||||    
T  38837603 gcgtgagctgttttgaaaattgcaatccaatatttgtttgtattcggtcaaaattgtcggtgttgtcaagacctcagtgtttgctttaataattgtcagt 38837702  T
Q  363 gttgtctaggtctca 377  Q
    |||||| || |||||    
T  38837703 gttgtcaagttctca 38837717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 89 - 371
Target Start/End: Complemental strand, 17785655 - 17785358
Alignment:
Q  89 cttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaac 188  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||    |||||||||||| ||||||||||||| |  |||||||||||||||||||    
T  17785655 cttggaggtggtggaaaaggagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagtacaacttggtgcaacaggagaaaaac 17785556  T
Q  189 agattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgtttt 288  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||  ||||||||||||  |||||||||||| ||||||||||||||    
T  17785555 agattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgactagaaaaaagagctactggaaaacttggagcgtgagctgtttt 17785456  T
Q  289 g---------------aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    |               ||||| |||||||||||||||||||||||||||||||||||||   | | ||||| ||| ||||||| | ||||||||||||    
T  17785455 gaaattaatttcaatcaaataattgtttgtattcggtcaaaattgtcagtgttgtctagtctctagtgtttgctttaataattattagtgttgtctag 17785358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 83 - 365
Target Start/End: Complemental strand, 51522640 - 51522343
Alignment:
Q  83 tgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggag 182  Q
    ||||| |||||||||||||||||||||||||||| |||||||| ||||||||     |||||||||||| |||||||||| ||||  |||||| ||||||    
T  51522640 tgctgccttggaggaggtggaaaaggagtgggttgaattcaaacaaatcaagctccaagagattgaacaattgaaagagttcaccttggtgcatcaggag 51522541  T
Q  183 aaaaacagattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagc 282  Q
    ||||||| ||| ||||||| || | ||||| ||||||||||||| ||||||||||| ||||||| ||| |||| |||||||||||| |||| ||||||||    
T  51522540 aaaaacaaattaaagaaaaggacattgtatgtaaagttaagttccgaagagcatctcgatgaccggaagaaagtgctgttggaaaagttggagcgtgagc 51522441  T
Q  283 tgttttg---------------aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgtt 365  Q
    |||||||               |||||||||||||||||||||||||||||||||||||||||||    || ||||| ||| ||||||||||||||||    
T  51522440 tgttttgaaattaatttcactcaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagtctacagtgtttgctttaataattgtcagtgtt 51522343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 195 - 402
Target Start/End: Complemental strand, 8470533 - 8470311
Alignment:
Q  195 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------- 287  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||  |||||||||||| ||| |||| || ||||||||||           
T  8470533 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatgaccggaagtaagagctgttgggaaagttggagcttgagctgtttaaaagtt 8470434  T
Q  288 --------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaat 379  Q
            | |||||||||||||||||| ||||||||| ||||||||||||||  |||||||||| ||| ||||||| ||||||||||||||  | || |    
T  8470433 aattttaattaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtccccaatgtttgctttaataattatcagtgttgtctagtccccagt 8470334  T
Q  380 gtttactttaataattgtcagtg 402  Q
    |||| ||||||||||| ||||||    
T  8470333 gtttgctttaataattatcagtg 8470311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 84 - 363
Target Start/End: Original strand, 18318491 - 18318805
Alignment:
Q  84 gctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggaga 183  Q
    |||| |||||||||||||||||||||||||||| |||||||| || |||||||   |||| ||||||| ||||||||||  |||  ||||||||||||||    
T  18318491 gctgccttggaggaggtggaaaaggagtgggttgaattcaaacaattcaaggagcaagagcttgaacaattgaaagagttaaccttggtgcaacaggaga 18318590  T
Q  184 aaaacagattg---------------------aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgtt 262  Q
    |||||| ||||                     |||||||||||| ||||||||||||| ||||| ||||||||||| ||||||| ||| |||||||| ||    
T  18318591 aaaacaaattgatgaaagaaaatactaaagataagaaaatgaaactgtatctaaagtt-agttccgaagagcatctcgatgaccggaagaaagagctatt 18318689  T
Q  263 ggaaaacttggtgcgtgagctgttt---------------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttact 347  Q
    |||||| |||| ||||||||| |||               | ||||||||||||||||||||| |||||||||||||||||||||  |||| ||||| ||    
T  18318690 ggaaaagttggagcgtgagctatttgaaaattaatttcaatcaaatatttgtttgtattcggttaaaattgtcagtgttgtctagtccccactgtttgct 18318789  T
Q  348 tcaataattgtcagtg 363  Q
    | ||||||||||||||    
T  18318790 ttaataattgtcagtg 18318805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 48406613 - 48406521
Alignment:
Q  195 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt 287  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||  || |||||| ||||||  || |||| |||||||||||||    
T  48406613 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatgaccgaaagaaagagttgttggggaagttggagcgtgagctgttt 48406521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 400
Target Start/End: Complemental strand, 31470468 - 31470251
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  31470468 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 31470369  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  31470368 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 31470269  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  31470268 tgctttaataattatcag 31470251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 400
Target Start/End: Complemental strand, 45241320 - 45241103
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  45241320 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 45241221  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  45241220 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 45241121  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  45241120 tgctttaataattatcag 45241103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17785741 - 17785691
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17785741 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 17785691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 31470684 - 31470634
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31470684 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 31470634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 45241536 - 45241486
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45241536 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 45241486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 48386036 - 48386253
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  48386036 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 48386135  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  48386136 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 48386235  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  48386236 tgctttaataattatcag 48386253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33166685 - 33166635
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33166685 cacgatgactctgtaggatctagtgctcgtccaatgggtagggaggcagct 33166635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 2475765 - 2475814
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2475765 acgaggactctgtaggatctagtgctcgtccaatgggtagggatgcagct 2475814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 48385821 - 48385870
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48385821 acgaggactctgtaggatctagtgctcgtccaatgggtagggatgcagct 48385870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 48406740 - 48406667
Alignment:
Q  89 cttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    ||||||| |||||||||||||||||||||||||||||||| | |||||   |||||||||||| ||||||||||    
T  48406740 cttggagaaggtggaaaaggagtgggttcaattcaaagaattaaaggagcaagagattgaacaattgaaagagt 48406667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 2475980 - 2476197
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| ||||||| |||||              
T  2475980 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagttgtttgaaaattaat 2476079  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaa-tgtttacttcaataattgtcagtgttgtctaggtctcaatgt 381  Q
         | |||||||||||||||||| ||||| ||| |||||||||||||| |||||| ||||| ||| |||| |||||||||||||||||  |  | |||    
T  2476080 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctag-tcccaactgtttgctttaatatttgtcagtgttgtctagtccgtagtgt 2476178  T
Q  382 ttactttaataattgtcag 400  Q
    || ||||||||||| ||||    
T  2476179 ttgctttaataattatcag 2476197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 38837328 - 38837378
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  38837328 cacggggactcagtaggatctagtgctcgtccaatgggtagggaggcagct 38837378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 48406825 - 48406776
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  48406825 acgatgactctgtaggatctagtgctcgttcaatgggtagggaggcagct 48406776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8470746 - 8470699
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggca 48  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||    
T  8470746 cacgaggactctgtaggatctagtgctcgtccaatggataggaaggca 8470699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 18318418 - 18318461
Alignment:
Q  8 actctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  18318418 actctgtaggatctagtgctcgtccaattggtagggaggcagct 18318461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 31470049 - 31469999
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  31470049 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 31469999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 407
Target Start/End: Complemental strand, 8470360 - 8470267
Alignment:
Q  314 aattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||| ||||||||||||||  |||| ||||| ||| ||||||| |||||||||| |||  | || ||||| |||||||||||||||||| ||||    
T  8470360 aattatcagtgttgtctagtccccagtgtttgctttaataattatcagtgttgtttagtccccagtgtttgctttaataattgtcagtgttgtc 8470267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 2475851 - 2475923
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  2475851 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 2475923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 31470597 - 31470525
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  31470597 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 31470525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 45241449 - 45241377
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  45241449 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 45241377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 48385907 - 48385979
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  48385907 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 48385979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 51522713 - 51522673
Alignment:
Q  8 actctgtaggatctagtgctcgtccaatgggtagggaggca 48  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  51522713 actctataggatctagtgctcgtccaatgggtagggaggca 51522673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 47298189 - 47298239
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||| ||||||||| |||||||||||||||||||  ||||||||||||||    
T  47298189 cacgacgactctgtaagatctagtgctcgtccaatcagtagggaggcagct 47298239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 8470648 - 8470587
Alignment:
Q  101 ggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||||||||||||||||||||||||| | |||||   ||||| |||||| ||||||||||    
T  8470648 ggaaaaggagtgggttcaattcaaagaattaaaggagcaagagactgaacaattgaaagagt 8470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 48406503 - 48406422
Alignment:
Q  290 aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    |||||||||||| ||||| ||||||||| ||||||||||||||  || | ||||| ||| |||| |||||||| || |||||    
T  48406503 aaatatttgtttatattcagtcaaaattatcagtgttgtctagtcccgagtgtttgctttaatatttgtcagtattatctag 48406422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 407
Target Start/End: Complemental strand, 31470049 - 31470002
Alignment:
Q  360 agtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    ||||||||||||  | ||||||||||||||||||||||||||| ||||    
T  31470049 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 31470002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 407
Target Start/End: Complemental strand, 33166356 - 33166302
Alignment:
Q  353 aattgtcagtgttgtctaggtctc-aatgtttactttaataattgtcagtgatgtc 407  Q
    ||||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||    
T  33166356 aattgtcagtgttgtctag-tctccaatttttactttaataattgtcagtgttgtc 33166302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 407
Target Start/End: Original strand, 47298517 - 47298571
Alignment:
Q  353 aattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    ||||||||||||||| |||  | |||||||| |||||||||||||||||| ||||    
T  47298517 aattgtcagtgttgtttagaccccaatgtttgctttaataattgtcagtgttgtc 47298571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 8470321 - 8470264
Alignment:
Q  314 aattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    |||| |||||||||| |||  |||| ||||| ||| ||||||||||||||||||||||    
T  8470321 aattatcagtgttgtttagtccccagtgtttgctttaataattgtcagtgttgtctag 8470264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 402
Target Start/End: Original strand, 18318756 - 18318805
Alignment:
Q  353 aattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagtg 402  Q
    |||||||||||||||||||  | || ||||| ||||||||||||||||||    
T  18318756 aattgtcagtgttgtctagtccccactgtttgctttaataattgtcagtg 18318805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 63)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 73 - 258
Target Start/End: Complemental strand, 33935600 - 33935415
Alignment:
Q  73 gtaaggacgctgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggt 172  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  33935600 gtaaggacgttgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggagcaagagattgaacatttgaaagagtacaccaaggt 33935501  T
Q  173 gcaacaggagaaaaacagattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagc 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33935500 gcaacaggagaaaaacagattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgaccggaaaaaagagc 33935415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 51429370 - 51429136
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagctnnnnnnnnnnnnnnnnnnnnn-gtaaggacgctgctggcttggaggagg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||||||||||||||    
T  51429370 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagctaaaaaaaaaggtaaaaagaaaagtaaggacgctgctggcttggaggagg 51429271  T
Q  100 tggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaacagattgaagaa 199  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51429270 tggaaaaggagtgggttcaattcaaagaaatcaaggataaagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaacagattgaagaa 51429171  T
Q  200 aatgaaaatgtatctaaagttaagttctgaagagc 234  Q
    ||||||||||||||||||||||| |||||||||||    
T  51429170 aatgaaaatgtatctaaagttaacttctgaagagc 51429136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 26157741 - 26158127
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagctnnnnnnnnnnnnnnnnnnnnn-gtaaggacgctgctggcttggaggagg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                      |||| ||||||| |||||||||| |||    
T  26157741 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagctaaaagaaaaggtaaaaagaaaagtaacgacgctgatggcttggagcagg 26157840  T
Q  100 tggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaacagattgaagaa 199  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| || |  |   |||||||||||||  |||||||||||    
T  26157841 tggaaaaggagtgggttcaagtcaaagaaatcaaggatagagagattgaacaattgaaagagttcaactcgaatcaacaggagaaaattagattgaagaa 26157940  T
Q  200 aatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttttg---------- 289  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||  ||||||| | |||||||  | ||||| |||||| |||||||              
T  26157941 aatgaaactgtatgtaaagttaagttctgaagagcatcttgatgaccgaaaaaaagcgttgttggaggagttggtacgtgagttgttttgaaattaattt 26158040  T
Q  290 -----aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
         ||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||||||||    
T  26158041 cagtcaaatatttggttgtattcggtcaaaattgtcagtgttgtctagtccccaatgtttactttaataagtgtcagtgttgtctag 26158127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 89 - 370
Target Start/End: Complemental strand, 33750974 - 33750676
Alignment:
Q  89 cttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaac 188  Q
    |||||||| ||||||||| ||||||||| ||||||||||||||||||    ||| |||||||| |||||||||||||||| |||||||||||||||||||    
T  33750974 cttggaggtggtggaaaaagagtgggttgaattcaaagaaatcaaggtgcaagatattgaacaattgaaagagtacaccatggtgcaacaggagaaaaac 33750875  T
Q  189 agattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt- 287  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||| |||||||||| ||||||||||||||| ||||||||| |||     
T  33750874 agattgaagaaaatgaaattgtatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagaggtgttggaaaacttggagcgtgagctttttg 33750775  T
Q  288 --------------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattg--tcagtgttgtcta 370  Q
                  | ||||| |||||||||||||||||||||||||||||||||||||  |||| ||||| ||| ||||||||  |||||||||||||    
T  33750774 gaaattaatttcaatcaaataattgtttgtattcggtcaaaattgtcagtgttgtctagtccccagtgtttgctttaataattgtttcagtgttgtcta 33750676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 89 - 367
Target Start/End: Complemental strand, 50019408 - 50019115
Alignment:
Q  89 cttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaac 188  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||  | |||||||||||| |||||||||||||||  ||||||||| |||||||||    
T  50019408 cttggaggaggtagaaaaggagtgggttgaattcaaagaaatcaaggtgaaagagattgaacaattgaaagagtacaccttggtgcaacatgagaaaaac 50019309  T
Q  189 agattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt- 287  Q
    | |||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||  |||||||||| ||||||||||||||| |||||||||||||     
T  50019308 atattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgactagaaaaaagagttgttggaaaacttggagcgtgagctgtttg 50019209  T
Q  288 --------------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgt 367  Q
                  | ||||||||||||||||||| |||||||||| ||||||||||||  |||| ||||| ||| ||||||||| ||| ||||    
T  50019208 gaaattaatttcaatcaaatatttgtttgtattcgatcaaaattgttagtgttgtctagtccccagtgtttgctttaataattgttagttttgt 50019115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 253 - 371
Target Start/End: Complemental strand, 51429141 - 51429024
Alignment:
Q  253 aagagctgttggaaaacttggtgcgtgagctgttttgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaat 352  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||    
T  51429141 aagagctgttggaaaacttggagcgtgagctgttttgaaaaatttgtttgtattcggtcaaaattgtca-tgttgtctagttcccaatgtttactttaat 51429043  T
Q  353 aattgtcagtgttgtctag 371  Q
    |||||||||||||||||||    
T  51429042 aattgtcagtgttgtctag 51429024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 75 - 196
Target Start/End: Original strand, 33188784 - 33188905
Alignment:
Q  75 aaggacgctgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgc 174  Q
    ||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||||    |||||||||||| |||||||||| ||||  |||||    
T  33188784 aaggacgctgctgccttggaggaagtggaaaaggagtgggttgaattcaaataaatcaaggtgcaagagattgaacaattgaaagagttcaccttggtgc 33188883  T
Q  175 aacaggagaaaaacagattgaa 196  Q
    ||||||||||||||||||||||    
T  33188884 aacaggagaaaaacagattgaa 33188905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 198 - 407
Target Start/End: Complemental strand, 47146553 - 47146329
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  47146553 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 47146454  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  47146453 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 47146354  T
Q  383 tactttaataattgtcagtgatgtc 407  Q
    | |||||||| ||||||||| ||||    
T  47146353 tgctttaatatttgtcagtgttgtc 47146329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 42563195 - 42563103
Alignment:
Q  195 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt 287  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||    
T  42563195 aagaaaatgaaaatgtatctaaagttaagtttcgaagagcatctcgatgaccggaagaaggagctgttggggaagttggagcgtgagctgttt 42563103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 400
Target Start/End: Complemental strand, 17468696 - 17468479
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  17468696 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 17468597  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  17468596 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 17468497  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  17468496 tgctttaataattatcag 17468479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 25788561 - 25788778
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  25788561 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 25788660  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  25788661 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 25788760  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  25788761 tgctttaataattatcag 25788778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 25830518 - 25830735
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  25830518 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaat 25830617  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  25830618 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 25830717  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  25830718 tgctttaataattatcag 25830735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 42599216 - 42599433
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  42599216 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 42599315  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  42599316 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 42599415  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  42599416 tgctttaataattatcag 42599433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17468912 - 17468862
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17468912 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 17468862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25788345 - 25788395
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25788345 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 25788395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25830302 - 25830352
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25830302 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 25830352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33751060 - 33751010
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33751060 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 33751010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42599000 - 42599050
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42599000 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 42599050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 10425513 - 10425730
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  10425513 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccagaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 10425612  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  10425613 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 10425712  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  10425713 tgctttaataattatcag 10425730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 30416317 - 30416534
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  30416317 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 30416416  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  30416417 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 30416516  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  30416517 tgctttaataattatcag 30416534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 273
Target Start/End: Complemental strand, 21227382 - 21227304
Alignment:
Q  195 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttgg 273  Q
    |||||||||||||||||||||||| |||||||| |||||||||| ||||||| ||| |||||| |||||| ||| ||||    
T  21227382 aagaaaatgaaaatgtatctaaagctaagttctaaagagcatctcgatgaccggaagaaagagatgttgggaaagttgg 21227304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 371
Target Start/End: Original strand, 33188922 - 33189000
Alignment:
Q  293 tatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||||||||||||||||| ||||||||||||  | || |||||  || ||||||||||||||||||||||    
T  33188922 tatttgtttgtattcggtcaaaattgttagtgttgtctagacctcagtgtttgttttaataattgtcagtgttgtctag 33189000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 33935669 - 33935623
Alignment:
Q  5 aggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33935669 aggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 33935623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47146769 - 47146719
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47146769 cacgaggactccgtaggatctagtgctcgtccaatgggtagggaggcagct 47146719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 6045974 - 6046023
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6045974 acgaggactctgtaggatctagtgctcgtccaatgggtagggatgcagct 6046023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 10425298 - 10425347
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10425298 acgaggactctgtaggatctagtgctcgtccaatgggtagggatgcagct 10425347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 30416102 - 30416151
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30416102 acgaggactctgtaggatctagtgctcgtccaatgggtagggatgcagct 30416151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 42563407 - 42563358
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42563407 acgaggactctgtaggatctagtgctcgtccaatgggtagggagtcagct 42563358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30689466 - 30689516
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  30689466 cacgatgattctgtaggatctagtgctcgtccaatgggtagggaggcagct 30689516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 30689551 - 30689597
Alignment:
Q  89 cttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaagg 135  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  30689551 cttggaggaggtgggaaaggagtgggttcaattcaaagaaatcaagg 30689597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33188709 - 33188753
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggag 45  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  33188709 cacgaggactctgtaggatctagtactcgtccaatgggtagggag 33188753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 6046189 - 6046406
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    |||||||||||||||||||||||||     ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  6046189 aaaatgaaaatgtatctaaagttaaaggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 6046288  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  |  | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  6046289 tttaatcaaatatttgtttgtattccgtcaacattatcagtgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 6046388  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  6046389 tgctttaataattatcag 6046406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 21230179 - 21230218
Alignment:
Q  12 tgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21230179 tgtaggatctagtgctcgtccaatgggtagggaggcagct 21230218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 50019494 - 50019451
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtaggga 44  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  50019494 cacgaggactccgtaggatctagtgctcgtccaatgggtaggga 50019451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 273
Target Start/End: Original strand, 21230380 - 21230458
Alignment:
Q  195 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttgg 273  Q
    |||||||||||||||||| ||||| |||||||  |||||||||| ||||||| ||| |||||  |||||||||| ||||    
T  21230380 aagaaaatgaaaatgtatataaagataagttccaaagagcatctcgatgaccagaagaaagatatgttggaaaagttgg 21230458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 25788779 - 25788829
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  25788779 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 25788829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 25788926 - 25788976
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  25788926 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 25788976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 25830736 - 25830786
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  25830736 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 25830786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 25830883 - 25830933
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  25830883 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 25830933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 47146089 - 47146039
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  47146089 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 47146039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 47146255 - 47146205
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  47146255 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 47146205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 6046060 - 6046132
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  6046060 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 6046132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 17468825 - 17468753
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  17468825 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 17468753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 25788432 - 25788504
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  25788432 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 25788504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 25830389 - 25830461
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  25830389 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 25830461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 30416188 - 30416260
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  30416188 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 30416260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 42563321 - 42563249
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| | ||||||||||| |||||||||||||||||| | |||||   |||||||||||| ||||||||||    
T  42563321 ttggagaatgtggaaaaggaatgggttcaattcaaagaattaaaggagcaagagattgaacaattgaaagagt 42563249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 42599087 - 42599159
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  42599087 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 42599159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 47146682 - 47146610
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  47146682 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 47146610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 21227584 - 21227549
Alignment:
Q  12 tgtaggatctagtgctcgtccaatgggtagggaggc 47  Q
    ||||||||||||||||||||||||||||||||||||    
T  21227584 tgtaggatctagtgctcgtccaatgggtagggaggc 21227549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 407
Target Start/End: Original strand, 25788733 - 25788826
Alignment:
Q  316 ttgtcagtgttgtctagctcccaatgtttacttcaataattgtcag--tgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||||||||||||  |  | ||||| ||| ||||||| ||||  ||||||||||  | ||||||||||||||||||||||||||| ||||    
T  25788733 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 25788826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 407
Target Start/End: Original strand, 25788880 - 25788973
Alignment:
Q  316 ttgtcagtgttgtctagctcccaatgtttacttcaataattgtcag--tgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||||||||||||  |  | ||||| ||| ||||||| ||||  ||||||||||  | ||||||||||||||||||||||||||| ||||    
T  25788880 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 25788973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 407
Target Start/End: Original strand, 25830690 - 25830783
Alignment:
Q  316 ttgtcagtgttgtctagctcccaatgtttacttcaataattgtcag--tgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||||||||||||  |  | ||||| ||| ||||||| ||||  ||||||||||  | ||||||||||||||||||||||||||| ||||    
T  25830690 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 25830783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 407
Target Start/End: Original strand, 25830837 - 25830930
Alignment:
Q  316 ttgtcagtgttgtctagctcccaatgtttacttcaataattgtcag--tgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||||||||||||  |  | ||||| ||| ||||||| ||||  ||||||||||  | ||||||||||||||||||||||||||| ||||    
T  25830837 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 25830930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 407
Target Start/End: Original strand, 26158070 - 26158124
Alignment:
Q  353 aattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||||||||||||||  | |||||||||||||||||| |||||||| ||||    
T  26158070 aattgtcagtgttgtctagtccccaatgtttactttaataagtgtcagtgttgtc 26158124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 407
Target Start/End: Complemental strand, 42562857 - 42562775
Alignment:
Q  325 ttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    ||||||||| | || ||||| ||| ||||||| ||||||||||||||  |||| ||||| ||||||||||| |||||| ||||    
T  42562857 ttgtctagccctcattgtttgctttaataattatcagtgttgtctagtcctcactgtttgctttaataattatcagtgttgtc 42562775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 407
Target Start/End: Complemental strand, 51429080 - 51429027
Alignment:
Q  353 aattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||| |||||||||| || ||||||||||||||||||||||||||| ||||    
T  51429080 aattgtca-tgttgtctagttcccaatgtttactttaataattgtcagtgttgtc 51429027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 10425384 - 10425456
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||  | || ||   |||||||||||| ||||||||||    
T  10425384 ttggagaaggtggaaaaggaatgggttcaattcaaagacttaaaagagcaagagattgaacaattgaaagagt 10425456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 402
Target Start/End: Complemental strand, 42562829 - 42562741
Alignment:
Q  314 aattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagtg 402  Q
    |||| ||||||||||||||  | || ||||| ||| ||||||| ||||||||||||||  | || ||||| ||||||||||| ||||||    
T  42562829 aattatcagtgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagtccacactgtttgctttaataattatcagtg 42562741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 360
Target Start/End: Complemental strand, 21227269 - 21227202
Alignment:
Q  293 tatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtca 360  Q
    |||||||||||||||||||||| ||| |||||||||| ||  |||  ||||| ||| |||||||||||    
T  21227269 tatttgtttgtattcggtcaaacttggcagtgttgtcaagtccccggtgtttgctttaataattgtca 21227202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 369
Target Start/End: Complemental strand, 42563085 - 42563006
Alignment:
Q  290 aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtct 369  Q
    |||||||||||||||||| ||||| ||| | ||||||||||||  ||   ||||| ||| |||| |||||||||||||||    
T  42563085 aaatatttgtttgtattcagtcaacattattagtgttgtctagtcccgtctgtttgctttaatatttgtcagtgttgtct 42563006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 407
Target Start/End: Complemental strand, 47146089 - 47146042
Alignment:
Q  360 agtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    ||||||||||||  | ||||||||||||||||||||||||||| ||||    
T  47146089 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 47146042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 407
Target Start/End: Complemental strand, 47146255 - 47146208
Alignment:
Q  360 agtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    ||||||||||||  | ||||||||||||||||||||||||||| ||||    
T  47146255 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 47146208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 105273 - 104851
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagctnnnnnnnnnnnnnnnnnnnnn-gtaaggacgctgctggcttggaggagg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                      ||||||| | |||||||||||||||||    
T  105273 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagctaaaaaaaaaggtaaaaagaaaagtaaggatgttgctggcttggaggagg 105174  T
Q  100 tggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaacagattgaagaa 199  Q
    ||||||||||||||||||||||||||||||||||||    |||||||||||| |||||||||| || |  |   ||||||||||||||||||||||||||    
T  105173 tggaaaaggagtgggttcaattcaaagaaatcaaggcgcaagagattgaacaattgaaagagttcaactcgaatcaacaggagaaaaacagattgaagaa 105074  T
Q  200 aatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttttgaaat------ 293  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||| || ||||||  | |||| | |||||||||||||||||          
T  105073 aatgaaactgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgcggttggaggagttggagtgtgagctgttttgaaattaattt 104974  T
Q  294 ---------atttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgttta 384  Q
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||   | |||||||||    
T  104973 cagtcaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagttcccaatgtttattttaataattgtcagtgttgtctaatccccaatgttta 104874  T
Q  385 ctttaataattgtcagtgatgtc 407  Q
    ||||||||| ||| |||| ||||    
T  104873 ctttaataagtgttagtgttgtc 104851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 407
Target Start/End: Complemental strand, 104905 - 104812
Alignment:
Q  314 aattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    ||||||||||||||||||   |||||||||||||| ||||| ||| ||||||||||||  | |||||||||||||||||| |||||||| ||||    
T  104905 aattgtcagtgttgtctaatccccaatgtttactttaataagtgttagtgttgtctagtccccaatgtttactttaataaatgtcagtgttgtc 104812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 104859 - 104809
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||| ||||||||||||||||    
T  104859 agtgttgtctagtccccaatgtttactttaataaatgtcagtgttgtctag 104809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 9e-83; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 73 - 407
Target Start/End: Original strand, 32127957 - 32128306
Alignment:
Q  73 gtaaggacgctgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggt 172  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||     ||||||||||| |||||||||| || |  |      
T  32127957 gtaaggacgctgatggcttggagcaggtggaaaaggagtgggttcaattcaaagaaatcaaggcgcatgagattgaacaattgaaagagttcaactcgaa 32128056  T
Q  173 gcaacaggagaaaaacagattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttg 272  Q
     |||||||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||| | |||||||  | |||    
T  32128057 tcaacaggagaaaaaaagattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgttgttggaggagttg 32128156  T
Q  273 gtgcgtgagctgttttgaaat---------------atttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattg 357  Q
    | |||||||||||||||||||               ||||||||||||||||||||||||| ||||||||||||| | |||||||||| || ||||||||    
T  32128157 gagcgtgagctgttttgaaattaatttcagtcaaatatttgtttgtattcggtcaaaattgccagtgttgtctagtttccaatgtttattttaataattg 32128256  T
Q  358 tcagtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    ||||||||||||||  |||||||||||||||||||| ||| |||| ||||    
T  32128257 tcagtgttgtctagtcctcaatgtttactttaataagtgttagtgttgtc 32128306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 26814563 - 26814141
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagctnnnnnnnnnnnnnnnnnnnnn-gtaaggacgctgctggcttggaggagg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||||  ||||||||| |||    
T  26814563 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagctaaaagaaaaggtaaaaagaaaagtaaggacgctgacggcttggagcagg 26814464  T
Q  100 tggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaacagattgaagaa 199  Q
    ||||||||||||||||||||||||||||||||||||    |||||||||||| |||||||||| || |  |   ||||| ||||||||||||||||||||    
T  26814463 tggaaaaggagtgggttcaattcaaagaaatcaaggcgcaagagattgaacaattgaaagagttcaactcgaatcaacatgagaaaaacagattgaagaa 26814364  T
Q  200 aatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttttg---------- 289  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||| |||||||||  | |||| |||||||||||||||              
T  26814363 aatgaaactgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgctgttggaggagttggagcgtgagctgttttgaaattaattt 26814264  T
Q  290 -----aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtct-caatgttt 383  Q
         ||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||| ||||| ||| ||||||||||| |||| ||||||||    
T  26814263 cagtcaaatatttgtttgtatttggtcaaaattgtcagtgttgtctagtccccaatgtttactttaataagtgttagtgttgtcta-gtctccaatgttt 26814165  T
Q  384 actttaataattgtcagtgatgtc 407  Q
    |||||||||| |||||||| ||||    
T  26814164 actttaataaatgtcagtgttgtc 26814141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 195 - 371
Target Start/End: Complemental strand, 22659132 - 22658941
Alignment:
Q  195 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------- 287  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||| ||| |||||||||||||     |||| |||||||||||||           
T  22659132 aagaaaatgaaaatgtatctaaagttaagtttcgaagagcatctcgatgaccggaagaaagagctgttggggctgttggagcgtgagctgtttgaaaatt 22659033  T
Q  288 --------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
            | |||||||||||||||||| ||||||||| ||||||||||||||   | | ||||| ||| |||| |||||||||||||||||    
T  22659032 aattttaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtctcgagtgtttgctttaatatttgtcagtgttgtctag 22658941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 400
Target Start/End: Complemental strand, 22193496 - 22193279
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  22193496 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaat 22193397  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  22193396 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 22193297  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  22193296 tgctttaataattatcag 22193279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 22193712 - 22193662
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22193712 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 22193662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 400
Target Start/End: Complemental strand, 36520712 - 36520495
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  36520712 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 36520613  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  36520612 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 36520513  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  36520512 tgctttaataattatcag 36520495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 407
Target Start/End: Original strand, 32128252 - 32128345
Alignment:
Q  314 aattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||||||||||||||  | |||||||||||| ||||| ||| ||||||||||||  |  ||||||||||||||||| |||||||| ||||    
T  32128252 aattgtcagtgttgtctagtcctcaatgtttactttaataagtgttagtgttgtctagtccctaatgtttactttaataaatgtcagtgttgtc 32128345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 36520926 - 36520877
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36520926 acgaggactctgtaggatctagtgctcgtccaatgggtagggatgcagct 36520877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 22659258 - 22659186
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| |||||||||||||||||||||||||||||||| | |||||   |||||||||||| ||||||||||    
T  22659258 ttggagaaggtggaaaaggagtgggttcaattcaaagaattaaaggagcaagagattgaacaattgaaagagt 22659186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 22659344 - 22659302
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtaggga 44  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22659344 acgaggactctgtaggatctagtgctcgtccaatgggtaggga 22659302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 32127884 - 32127934
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  32127884 cacgaggactctgtaagatctagtgctcgtccaatgagtagggaggcagct 32127934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 22193131 - 22193081
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  22193131 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 22193081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 22193278 - 22193228
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  22193278 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 22193228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 22193625 - 22193553
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  22193625 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 22193553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 407
Target Start/End: Complemental strand, 22193177 - 22193084
Alignment:
Q  316 ttgtcagtgttgtctagctcccaatgtttacttcaataattgtcag--tgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||||||||||||  |  | ||||| ||| ||||||| ||||  ||||||||||  | ||||||||||||||||||||||||||| ||||    
T  22193177 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 22193084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 407
Target Start/End: Complemental strand, 22193324 - 22193231
Alignment:
Q  316 ttgtcagtgttgtctagctcccaatgtttacttcaataattgtcag--tgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||||||||||||  |  | ||||| ||| ||||||| ||||  ||||||||||  | ||||||||||||||||||||||||||| ||||    
T  22193324 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 22193231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 36520841 - 36520769
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||  | || ||   |||||||||||| ||||||||||    
T  36520841 ttggagaaggtggaaaaggaatgggttcaattcaaagagttaaaagagcaagagattgaacaattgaaagagt 36520769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 26814188 - 26814138
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||   ||||||||||||| ||||| ||||||||||||||||    
T  26814188 agtgttgtctagtctccaatgtttactttaataaatgtcagtgttgtctag 26814138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 32128298 - 32128348
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  || ||||||||||| ||||| ||||||||||||||||    
T  32128298 agtgttgtctagtccctaatgtttactttaataaatgtcagtgttgtctag 32128348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 407
Target Start/End: Complemental strand, 22658673 - 22658579
Alignment:
Q  316 ttgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgt---ctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||||||||||||  |||| ||||| ||| ||||||| ||||||||||   ||||  |||  ||||| ||||||||||| |||||| ||||    
T  22658673 ttgtcagtgttgtctagtccccactgtttgctttaataattatcagtgttgttgtctagtcctccctgtttgctttaataattatcagtgttgtc 22658579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 402
Target Start/End: Complemental strand, 22658714 - 22658626
Alignment:
Q  314 aattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagtg 402  Q
    |||| ||||||||||||||  || | | ||| ||| |||| |||||||||||||||||  | || ||||| ||||||||||| ||||||    
T  22658714 aattatcagtgttgtctagtcccgactatttgctttaatatttgtcagtgttgtctagtccccactgtttgctttaataattatcagtg 22658626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 9e-83; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 24917254 - 24917663
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagctnnnnnnnnnnnnnnnnnnnnngtaaggacgctgctggcttggaggaggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                     | |||||| ||| |||||||||  ||||    
T  24917254 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagctaaaagaaaa------------gcaaggacactgatggcttggaaaaggt 24917341  T
Q  101 ggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaacagattgaagaaa 200  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||| |||||||||| || |  | |||||||||||||||||| ||||||||||    
T  24917342 ggaaaaggagtgggttcaattcaaagaaatcaaggcccaagagattgaacaattgaaagagttcaacttgatgcaacaggagaaaaacaaattgaagaaa 24917441  T
Q  201 atgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttttg----------- 289  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||  | |||| | || ||||||||||               
T  24917442 atgaaactgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagagctgttggaggagttggagagtaagctgttttgaaattaatttc 24917541  T
Q  290 ----aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtttac 385  Q
        |||||||||||||| || |||||||||||||||||||||||||   ||||||||||||| |||||||| |||||||||||||  | ||||||||||    
T  24917542 agtcaaatatttgtttgtgtttggtcaaaattgtcagtgttgtctagtatccaatgtttactttaataattgccagtgttgtctagtccccaatgtttac 24917641  T
Q  386 tttaataattgtcagtgatgtc 407  Q
    ||||||||||||||||| ||||    
T  24917642 tttaataattgtcagtgttgtc 24917663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 75 - 402
Target Start/End: Complemental strand, 18641610 - 18641268
Alignment:
Q  75 aaggacgctgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgc 174  Q
    ||||||| || |||||||||| || ||||||||||||||||| ||||||||||||| ||||    |||||||||| | |||||| ||| ||||  |||||    
T  18641610 aaggacgttgttggcttggagcagctggaaaaggagtgggttgaattcaaagaaattaaggtgcaagagattgaagaattgaaaaagttcaccttggtgc 18641511  T
Q  175 aacaggagaaaaacagattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggt 274  Q
    ||||||||| ||| |||||||||||||||||| ||||| ||||||||||||| ||||||||||| |||||||  ||||||||| ||||||| || ||||     
T  18641510 aacaggagacaaatagattgaagaaaatgaaattgtatataaagttaagttccgaagagcatctcgatgaccgaaaaaaagagttgttggagaagttgga 18641411  T
Q  275 gcgtgagctgttttg---------------aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtc 359  Q
    |||||||||||||||               ||||||||||||||||||| ||||||||||||||||||||||| | |||||||||| || ||||||||||    
T  18641410 gcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcgttcaaaattgtcagtgttgtctagtttccaatgtttagtttaataattgtc 18641311  T
Q  360 agtgttgtctaggtctcaatgtttactttaataattgtcagtg 402  Q
    | |||||| |||   ||||||||||||||||||||| ||||||    
T  18641310 aatgttgtttagtcttcaatgtttactttaataattatcagtg 18641268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 8221395 - 8221303
Alignment:
Q  195 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt 287  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||| ||| |||| |||||||||||||    
T  8221395 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaagagctgttgggaaagttggagcgtgagctgttt 8221303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 24114326 - 24114234
Alignment:
Q  195 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt 287  Q
    |||||||||||  || |||||||||||||||| ||||||||||| ||||||| ||| |||||| |||||||||| |||| |||||||||||||    
T  24114326 aagaaaatgaagttgcatctaaagttaagttccgaagagcatctcgatgaccggaagaaagagttgttggaaaagttggagcgtgagctgttt 24114234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 400
Target Start/End: Complemental strand, 633950 - 633733
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  633950 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaat 633851  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  633850 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 633751  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  633750 tgctttaataattatcag 633733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 6378283 - 6378500
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  6378283 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaat 6378382  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  6378383 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 6378482  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  6378483 tgctttaataattatcag 6378500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 17959151 - 17959368
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  17959151 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 17959250  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  17959251 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 17959350  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  17959351 tgctttaataattatcag 17959368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 634166 - 634116
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  634166 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 634116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6378067 - 6378117
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6378067 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 6378117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8221602 - 8221552
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8221602 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 8221552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17958935 - 17958985
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17958935 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 17958985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 400
Target Start/End: Complemental strand, 34840691 - 34840474
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  34840691 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 34840592  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  34840591 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 34840492  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  34840491 tgctttaataattatcag 34840474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18641685 - 18641635
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18641685 cacgaggactctgtaggatctagtgcttgtccaatgggtagggaggcagct 18641635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 407
Target Start/End: Complemental strand, 8220963 - 8220870
Alignment:
Q  314 aattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||| ||||||||||||||  |||| ||||| ||| | ||||||||||||||||||||  | || ||||| |||||||||||||||||| ||||    
T  8220963 aattatcagtgttgtctagtccccagtgtttgctttagtaattgtcagtgttgtctagtccccagtgtttgctttaataattgtcagtgttgtc 8220870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 8221522 - 8221453
Alignment:
Q  89 cttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaa 158  Q
    ||||||| |||||||||||||||||||||||||||||||| | |||||   |||||||||||| ||||||    
T  8221522 cttggagaaggtggaaaaggagtgggttcaattcaaagaattaaaggagcaagagattgaacaattgaaa 8221453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 24917609 - 24917666
Alignment:
Q  314 aattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||| |||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  24917609 aattgccagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 24917666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 34840906 - 34840857
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  34840906 acgaggactctgtaggatctagtgctcgtccaataggtagggatgcagct 34840857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 24114528 - 24114488
Alignment:
Q  8 actctgtaggatctagtgctcgtccaatgggtagggaggca 48  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24114528 actctgtaggatctagtgctcgtccaatgggtagggaggca 24114488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 195
Target Start/End: Complemental strand, 24114456 - 24114345
Alignment:
Q  84 gctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggaga 183  Q
    |||| |||||||||||| |||||||||||| || |||||||| || ||||| |   |||| ||||||| ||||||||||  |||  ||||||||| ||||    
T  24114456 gctgccttggaggaggttgaaaaggagtggattgaattcaaacaattcaagaagcaagagcttgaacaattgaaagagttaaccttggtgcaacatgaga 24114357  T
Q  184 aaaacagattga 195  Q
    |||||| |||||    
T  24114356 aaaacaaattga 24114345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 633438 - 633388
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  633438 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 633388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 633585 - 633535
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  633585 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 633535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 633732 - 633682
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  633732 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 633682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 6378501 - 6378551
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  6378501 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 6378551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 6378648 - 6378698
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  6378648 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 6378698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 8220924 - 8220867
Alignment:
Q  314 aattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    |||||||||||||||||||  |||| ||||| ||| ||||||||||||||||||||||    
T  8220924 aattgtcagtgttgtctagtccccagtgtttgctttaataattgtcagtgttgtctag 8220867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 634079 - 634007
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  634079 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 634007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 6378154 - 6378226
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  6378154 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 6378226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 17959022 - 17959094
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  17959022 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 17959094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 34840820 - 34840748
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  34840820 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 34840748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 407
Target Start/End: Complemental strand, 633484 - 633391
Alignment:
Q  316 ttgtcagtgttgtctagctcccaatgtttacttcaataattgtcag--tgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||||||||||||  |  | ||||| ||| ||||||| ||||  ||||||||||  | ||||||||||||||||||||||||||| ||||    
T  633484 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 633391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 407
Target Start/End: Complemental strand, 633631 - 633538
Alignment:
Q  316 ttgtcagtgttgtctagctcccaatgtttacttcaataattgtcag--tgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||||||||||||  |  | ||||| ||| ||||||| ||||  ||||||||||  | ||||||||||||||||||||||||||| ||||    
T  633631 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 633538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 407
Target Start/End: Complemental strand, 633778 - 633685
Alignment:
Q  316 ttgtcagtgttgtctagctcccaatgtttacttcaataattgtcag--tgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||||||||||||  |  | ||||| ||| ||||||| ||||  ||||||||||  | ||||||||||||||||||||||||||| ||||    
T  633778 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 633685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 407
Target Start/End: Original strand, 6378455 - 6378548
Alignment:
Q  316 ttgtcagtgttgtctagctcccaatgtttacttcaataattgtcag--tgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||||||||||||  |  | ||||| ||| ||||||| ||||  ||||||||||  | ||||||||||||||||||||||||||| ||||    
T  6378455 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 6378548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 407
Target Start/End: Original strand, 6378602 - 6378695
Alignment:
Q  316 ttgtcagtgttgtctagctcccaatgtttacttcaataattgtcag--tgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||||||||||||  |  | ||||| ||| ||||||| ||||  ||||||||||  | ||||||||||||||||||||||||||| ||||    
T  6378602 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 6378695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 8221285 - 8221243
Alignment:
Q  290 aaatatttgtttgtattcggtcaaaattgtcagtgttgtctag 332  Q
    |||||||||||||||||| ||||||||| ||||||||||||||    
T  8221285 aaatatttgtttgtattcagtcaaaattatcagtgttgtctag 8221243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 407
Target Start/End: Complemental strand, 8221002 - 8220909
Alignment:
Q  314 aattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||| |||||||| |||||  |||| ||||| ||| ||||||| ||||||||||||||  | || ||||| ||||| |||||||||||| ||||    
T  8221002 aattatcagtgttctctagtccccagtgtttgctttaataattatcagtgttgtctagtccccagtgtttgctttagtaattgtcagtgttgtc 8220909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 407
Target Start/End: Complemental strand, 24114210 - 24114153
Alignment:
Q  350 aataattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    ||||||||||||||||||||||  | ||  |||| |||||||||||||||||| ||||    
T  24114210 aataattgtcagtgttgtctagtccccacagtttgctttaataattgtcagtggtgtc 24114153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1240 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 89 - 380
Target Start/End: Original strand, 439 - 745
Alignment:
Q  89 cttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaac 188  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||    |||||||||||| |||||||||||||||  |||||||||||||||||||    
T  439 cttggagggggtggaaaaggagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaattgaaagagtacaccttggtgcaacaggagaaaaac 538  T
Q  189 agattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt- 287  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||| | |||||||||||||||||||||||| |||||||||||||     
T  539 agattgaagaaaatgaaactgtatgtaaagttaagttccgaagagcatctcgatgaccgggaaaaagagctgttggaaaacttggagcgtgagctgtttg 638  T
Q  288 --------------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggt 373  Q
                  | ||||| ||||||||||||||||||||||||||||||||| |||  |||| ||||| ||| ||||||||||||||||||||||      
T  639 gaaattaatttcaatcaaataattgtttgtattcggtcaaaattgtcagtgttgtatagtccccagtgtttgctttaataattgtcagtgttgtctagtc 738  T
Q  374 ctcaatg 380  Q
    |||||||    
T  739 ctcaatg 745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1240; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 353 - 403
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  353 cacgaggactctgtaggatctagtgctcatccgacgggtagggaggcagct 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 4e-79; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 75 - 371
Target Start/End: Original strand, 30530341 - 30530652
Alignment:
Q  75 aaggacgctgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgc 174  Q
    ||||||||| ||| ||| |||||||||||||||||||||||| |||||||| |||||||||    |||||||||||| |||||||||| ||||  ||||     
T  30530341 aaggacgctactgccttagaggaggtggaaaaggagtgggttgaattcaaacaaatcaaggtacaagagattgaacaattgaaagagttcaccttggtgt 30530440  T
Q  175 aacaggagaaaaacagattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggt 274  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||| ||||     
T  30530441 aacaggagaaaaacagattgaagaaaatgaaattgtatgtaaagttaagttccaaagagcatctcgatgaccggaaaaaagagctgttggaaaagttgga 30530540  T
Q  275 gcgtgagctgttttg---------------aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtc 359  Q
    |||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||  || |  |||||||| ||||||||||    
T  30530541 gcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagtcccgagcgtttactttaataattgtc 30530640  T
Q  360 agtgttgtctag 371  Q
    ||||||||||||    
T  30530641 agtgttgtctag 30530652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 17744068 - 17743686
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagctnnnnnnnnnnnnnnnnnnnnngtaaggacgctgctggcttggaggaggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                     | ||| |||||||   ||||||||||||    
T  17744068 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagctaaaagaaaggtaaaaagaaaagcaagaacgctgc---cttggaggaggt 17743972  T
Q  101 ggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaacagattgaagaaa 200  Q
    ||||||||||||| || ||||||||||||||||||    |||||||||| | |||||||||| ||||   |||||| |||||||||||||||||||||||    
T  17743971 ggaaaaggagtggattgaattcaaagaaatcaaggtgcaagagattgaaaaattgaaagagttcaccgcagtgcaataggagaaaaacagattgaagaaa 17743872  T
Q  201 atgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------------- 287  Q
    |||||| ||||| ||||||||||||| ||||||||||| ||||||| ||||||||||  |||||||||||||| |||||||||||||                 
T  17743871 atgaaattgtatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagagacgttggaaaacttggagcgtgagctgtttgcaaattaatttc 17743772  T
Q  288 --tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
      | || |||||||||||||||||| | |||||||||||||||||||  |||| ||||| ||| ||||||||||| ||||||||||    
T  17743771 aatcaactatttgtttgtattcggtaataattgtcagtgttgtctagtccccagtgtttgctttaataattgtcaatgttgtctag 17743686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 195 - 371
Target Start/End: Complemental strand, 15055832 - 15055641
Alignment:
Q  195 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------- 287  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||           
T  15055832 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaggagctgttggggaagttggagcgtgagctgtttgaaaatt 15055733  T
Q  288 --------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
            | |||||||||||||||||| ||||||||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||    
T  15055732 aattttaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctag 15055641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 195 - 371
Target Start/End: Complemental strand, 27359358 - 27359167
Alignment:
Q  195 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------- 287  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||| ||  || |||||| |||||||||| |||| |||||||||||||           
T  27359358 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatggccgtaagaaagagttgttggaaaagttggagcgtgagctgtttggaaatt 27359259  T
Q  288 --------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
            | |||||||||||||||||||||||||||||| | |||||||||   |||| ||||| ||| ||||||||||| ||||||||||    
T  27359258 aatttcaatcaaatatttgtttgtattcggtcaaaattgtaaatgttgtctaatccccagtgtttgctttaataattgtcaatgttgtctag 27359167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 195 - 371
Target Start/End: Complemental strand, 27368715 - 27368524
Alignment:
Q  195 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------- 287  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||| ||  || |||||| |||||||||| |||| |||||||||||||           
T  27368715 aagaaaatgaaaatgtatctaaagttaagttccgaagagcatctcgatggccgtaagaaagagttgttggaaaagttggagcgtgagctgtttggaaatt 27368616  T
Q  288 --------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
            | |||||||||||||||||||||||||||||| | |||||||||   |||| ||||| ||| ||||||||||| ||||||||||    
T  27368615 aatttcaatcaaatatttgtttgtattcggtcaaaattgtaaatgttgtctaatccccagtgtttgctttaataattgtcaatgttgtctag 27368524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 15056044 - 15055995
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15056044 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 15055995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 1956140 - 1956357
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  1956140 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 1956239  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  1956240 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 1956339  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  1956340 tgctttaataattatcag 1956357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 27359485 - 27359379
Alignment:
Q  89 cttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaac 188  Q
    |||||||||||||||||||||||||||| ||||||||||| | |||||   |||| ||||||| ||||||||||  |||  |||| |||| |||||||||    
T  27359485 cttggaggaggtggaaaaggagtgggttgaattcaaagaattaaaggagcaagaggttgaacaattgaaagagttaaccttggtgaaacaagagaaaaac 27359386  T
Q  189 agattga 195  Q
    | |||||    
T  27359385 aaattga 27359379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 27368842 - 27368736
Alignment:
Q  89 cttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaac 188  Q
    |||||||||||||||||||||||||||| ||||||||||| | |||||   |||| ||||||| ||||||||||  |||  |||| |||| |||||||||    
T  27368842 cttggaggaggtggaaaaggagtgggttgaattcaaagaattaaaggagcaagagtttgaacaattgaaagagttaaccttggtgaaacaagagaaaaac 27368743  T
Q  189 agattga 195  Q
    | |||||    
T  27368742 aaattga 27368736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35100893 - 35100843
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35100893 cacgaggactatgtaggatctagtgctcgtccaatgggtagggaggcagct 35100843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 1955925 - 1955974
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1955925 acgaggactctgtaggatctagtgctcgtccaatgggtagggatgcagct 1955974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30530267 - 30530311
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggag 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30530267 cacgaggactctgtaggatctagtgctcgtccaatgggtagggag 30530311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 15055959 - 15055887
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| |||||||||| ||||||||||||||||||||| | |||||   |||||||||||| ||||||||||    
T  15055959 ttggagaaggtggaaaatgagtgggttcaattcaaagaattaaaggagcaagagattgaacaattgaaagagt 15055887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27359561 - 27359511
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||||||    
T  27359561 cacgagaactctgtaggatctagtgctcgtccaatgaatagggaggcagct 27359511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27368918 - 27368868
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||||||    
T  27368918 cacgagaactctgtaggatctagtgctcgtccaatgaatagggaggcagct 27368868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 1956011 - 1956083
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  1956011 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 1956083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 35100806 - 35100768
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaa 128  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  35100806 ttggagaaggtggaaaaggaatgggttcaattcaaagaa 35100768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 17743746 - 17743697
Alignment:
Q  350 aataattgtcagtgttgtctaggtctcaatgtttactttaataattgtca 399  Q
    ||||||||||||||||||||||  | || ||||| |||||||||||||||    
T  17743746 aataattgtcagtgttgtctagtccccagtgtttgctttaataattgtca 17743697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 84 - 365
Target Start/End: Original strand, 31185960 - 31186255
Alignment:
Q  84 gctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggaga 183  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||||||    |||||| ||||| |||||||||| ||||  ||||||||| ||||    
T  31185960 gctgccttggaggaggtggaaaagaagtgggttgaattcaaagaaatcaaggtgcaagagatcgaacaattgaaagagttcaccgcggtgcaacatgaga 31186059  T
Q  184 aaaacagattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagct 283  Q
    || |||||||||||||||||||| ||||| ||| ||||||||| | ||| ||||| ||||||| |||||||||| |||||||||||||||  ||||||||    
T  31186060 aatacagattgaagaaaatgaaactgtatgtaatgttaagttccggagaacatctcgatgaccggaaaaaagagatgttggaaaacttggaacgtgagct 31186159  T
Q  284 gttt---------------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgtt 365  Q
    ||||               | ||||||||||||||||||||| | ||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||    
T  31186160 gtttgaaaattaatttcaatcaaatatttgtttgtattcggtaataattgtcagtgttgtctag-tcccagtgttttctttaataattgtcagtgtt 31186255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 4278461 - 4278259
Alignment:
Q  89 cttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggagaaaaac 188  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    |||||||||||| || ||||||| ||||  |||||||||||||||||||    
T  4278461 cttggaggaggtggaaaaggagtgggttgaattcaaagaaatcaaggtgcaagagattgaacaatttaaagagttcaccttggtgcaacaggagaaaaac 4278362  T
Q  189 agattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgtttt 288  Q
    |||||||||||||||||| ||||| ||||||||||||  ||||||||||| |||||||   ||||| ||||||||||| | |||| |||||||||||||     
T  4278361 agattgaagaaaatgaaactgtatgtaaagttaagtttcgaagagcatctcgatgacc--gaaaaatagctgttggaagagttggagcgtgagctgtttg 4278264  T
Q  289 gaaat 293  Q
    |||||    
T  4278263 gaaat 4278259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 84 - 377
Target Start/End: Original strand, 31205674 - 31205985
Alignment:
Q  84 gctggcttggaggaggtggaaaaggagtgggttcaattcaaagaa--atcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacagga 181  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||  |||||||    | |||| ||||| |||||||||| ||||  ||||||||||||    
T  31205674 gctgccttggaggaggtggaaaaggagtgggttgaattcaaaaaataatcaaggtgcaatagatcgaacaattgaaagagttcaccgcggtgcaacagga 31205773  T
Q  182 gaaaaacagattgaagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgag 281  Q
    ||||||||||||||||||||||||| ||||| ||| |||||||||||||||  |||| ||||||| |||||||||| |||||||||||||||   |||||    
T  31205774 gaaaaacagattgaagaaaatgaaactgtatgtaatgttaagttctgaagaatatctcgatgaccggaaaaaagagatgttggaaaacttggaatgtgag 31205873  T
Q  282 ctgttt---------------tgaaatatttgtttgtattcggtcaaaattgtcagtg-ttgtctagctcccaatgtttacttcaataattgtcagtgtt 365  Q
    ||||||               | ||||||||||||||||||||| | ||||||||||| ||||||||  |||| ||||| ||| ||||||||| ||||||    
T  31205874 ctgtttgaaaattaatttcaatcaaatatttgtttgtattcggtaataattgtcagtgtttgtctagtccccagtgtttgctttaataattgttagtgtt 31205973  T
Q  366 gtctaggtctca 377  Q
    |||||| |||||    
T  31205974 gtctagttctca 31205985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 371
Target Start/End: Original strand, 40879701 - 40879877
Alignment:
Q  208 tgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttttgaaat-------------- 293  Q
    ||||| |||||||||||||  |||||||||| ||||| | |||||| |||||||||||||| |||| |||||||||||||||||||                  
T  40879701 tgtatgtaaagttaagttccaaagagcatctcgatgatcggaaaaaggagctgttggaaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 40879800  T
Q  294 -atttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
     ||||||||||  |||||||||||||||||||||||||||  |||| ||||| ||| ||||||||||||||||||||||    
T  40879801 tatttgtttgt--tcggtcaaaattgtcagtgttgtctagtccccagtgtttgctttaataattgtcagtgttgtctag 40879877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 9073773 - 9073990
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  9073773 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 9073872  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  9073873 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 9073972  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  9073973 tgctttaataattatcag 9073990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 400
Target Start/End: Complemental strand, 12857159 - 12856942
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  12857159 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaat 12857060  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  12857059 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 12856960  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  12856959 tgctttaataattatcag 12856942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 30820470 - 30820687
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  30820470 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 30820569  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  30820570 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 30820669  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  30820670 tgctttaataattatcag 30820687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 198 - 371
Target Start/End: Complemental strand, 8854279 - 8854091
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  8854279 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 8854180  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| ||| ||||||||||||||||||    
T  8854179 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatcattgtcagtgttgtctag 8854091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8854495 - 8854445
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8854495 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 8854445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9073557 - 9073607
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9073557 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 9073607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12857375 - 12857325
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12857375 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 12857325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30820254 - 30820304
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30820254 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 30820304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 7586390 - 7586607
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  7586390 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 7586489  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  7586490 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 7586589  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  7586590 tgctttaataattatcag 7586607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31205594 - 31205644
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31205594 cacgaggactttgtaggatctagtgctcgtccaatgggtagggaggcagct 31205644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 7586175 - 7586224
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7586175 acgaggactctgtaggatctagtgctcgtccaatgggtagggatgcagct 7586224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 31185882 - 31185929
Alignment:
Q  4 gaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  31185882 gaggactttgtaggatctagtgctcgtccaatgggtagggaggaagct 31185929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 8853979 - 8853929
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  8853979 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 8853929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 12856941 - 12856891
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  12856941 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtctag 12856891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 7586261 - 7586333
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  7586261 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 7586333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 8854408 - 8854336
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  8854408 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 8854336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 12857288 - 12857216
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  12857288 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 12857216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 30820341 - 30820413
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  30820341 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 30820413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 407
Target Start/End: Complemental strand, 12856987 - 12856894
Alignment:
Q  316 ttgtcagtgttgtctagctcccaatgtttacttcaataattgtcag--tgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||||||||||||  |  | ||||| ||| ||||||| ||||  ||||||||||  | ||||||||||||||||||||||||||| ||||    
T  12856987 ttgtcagtgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 12856894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 31186202 - 31186253
Alignment:
Q  350 aataattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagtg 402  Q
    ||||||||||||||||||||| ||| || ||||| ||||||||||||||||||    
T  31186202 aataattgtcagtgttgtcta-gtcccagtgttttctttaataattgtcagtg 31186253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 407
Target Start/End: Complemental strand, 8853979 - 8853932
Alignment:
Q  360 agtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    ||||||||||||  | ||||||||||||||||||||||||||| ||||    
T  8853979 agtgttgtctagtccccaatgtttactttaataattgtcagtgttgtc 8853932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 407
Target Start/End: Original strand, 9073991 - 9074077
Alignment:
Q  321 agtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    ||||||||||||  | || ||||| ||| ||||||| |||||||||||||| ||  | ||||| |||||||| ||||||||| ||||    
T  9073991 agtgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagttccgactgtttgctttaatatttgtcagtgttgtc 9074077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 407
Target Start/End: Original strand, 40879820 - 40879874
Alignment:
Q  353 aattgtcagtgttgtctaggtctcaatgtttactttaataattgtcagtgatgtc 407  Q
    |||||||||||||||||||  | || ||||| |||||||||||||||||| ||||    
T  40879820 aattgtcagtgttgtctagtccccagtgtttgctttaataattgtcagtgttgtc 40879874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 9074023 - 9074079
Alignment:
Q  314 aattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtcta 370  Q
    |||| |||||||||||||| ||| | ||||| ||| |||| ||||||||||||||||    
T  9074023 aattatcagtgttgtctagttccgactgtttgctttaatatttgtcagtgttgtcta 9074079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 34710414 - 34710303
Alignment:
Q  83 tgctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggag 182  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||    ||||||||| || |||||||||| ||||  |||||||||||||    
T  34710414 tgctgccttggaggaggtggaaaaggagtgggttgaattcaaagaaatcaaggtgcaagagattgagcaattgaaagagttcaccttggtgcaacaggag 34710315  T
Q  183 aaaaacagattg 194  Q
    ||||||||||||    
T  34710314 aaaaacagattg 34710303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 195 - 371
Target Start/End: Original strand, 29617379 - 29617570
Alignment:
Q  195 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------- 287  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||||||||  || |||| |||||||||||||           
T  29617379 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatctcgatgaccgaaagaaagagctgttggggaagttggagcgtgagctgtttgaaaatt 29617478  T
Q  288 --------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
            | |||||||||||||||||  ||||||||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||    
T  29617479 aattttaatcaaatatttgtttgtatttagtcaaaattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctag 29617570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 195 - 371
Target Start/End: Original strand, 30646715 - 30646905
Alignment:
Q  195 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt------- 287  Q
    |||||||||||| |||||||||||||||||| |||||||||||| |||||||  |  ||||||||||||||||| |||| |||||||||||||           
T  30646715 aagaaaatgaaa-tgtatctaaagttaagttatgaagagcatctcgatgaccgaatgaaagagctgttggaaaagttggagcgtgagctgtttgaaaatt 30646813  T
Q  288 --------tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
            | |||||||||||||||||| ||||||||| ||||||||||||||   | | ||||| ||| |||| |||||||||||||||||    
T  30646814 aattttaatcaaatatttgtttgtattcagtcaaaattatcagtgttgtctagtcacgagtgtttgctttaatatttgtcagtgttgtctag 30646905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 400
Target Start/End: Complemental strand, 4579289 - 4579072
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||| || |||| |||||||||||||              
T  4579289 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaat 4579190  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  4579189 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 4579090  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  4579089 tgctttaataattatcag 4579072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4579505 - 4579455
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579505 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 4579455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34710499 - 34710449
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34710499 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 34710449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 400
Target Start/End: Complemental strand, 27944836 - 27944619
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  27944836 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 27944737  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| |||||| ||||||| ||| | ||||| ||| |||| |||||||||||||||||  |  | ||||    
T  27944736 tttaatcaaatatttgtttgtattcagtcaacattatcagtgctgtctagttccgactgtttgctttaatatttgtcagtgttgtctagtccgtagtgtt 27944637  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  27944636 tgctttaataattatcag 27944619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 30646506 - 30646552
Alignment:
Q  5 aggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30646506 aggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 30646552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 27945051 - 27945002
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27945051 acgaggactctgtaggatctagtgctcgtccaatgggtagggatgcagct 27945002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 29617167 - 29617216
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29617167 acgaggactctgtaggatctagtgctcatccaatgggtagggaggcagct 29617216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 30646588 - 30646661
Alignment:
Q  89 cttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    ||||||| |||||||||||||||||||||||||||||||| | |||||   |||||||||||| ||||||||||    
T  30646588 cttggagaaggtggaaaaggagtgggttcaattcaaagaattaaaggagcaagagattgaacaattgaaagagt 30646661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 32974211 - 32974428
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  32974211 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 32974310  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctaggtctcaatgtt 382  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  || | | ||| ||| |||| |||||||||||||||||  |  | ||||    
T  32974311 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactatttgctttaatatttgtcagtgttgtctagtccgtagtgtt 32974410  T
Q  383 tactttaataattgtcag 400  Q
    | ||||||||||| ||||    
T  32974411 tgctttaataattatcag 32974428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 371
Target Start/End: Complemental strand, 40891007 - 40890819
Alignment:
Q  198 aaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttggtgcgtgagctgttt---------- 287  Q
    ||||||||||||||||||||||||||    ||||||||||| ||||||| ||| || ||||||||||  || |||| |||||||||||||              
T  40891007 aaaatgaaaatgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaat 40890908  T
Q  288 -----tgaaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgtctag 371  Q
         | |||||||||||||||||| ||||| ||| ||||||||||||||  |  | ||||| ||| |||| |||||||||||||||||    
T  40890907 tttaatcaaatatttgtttgtattcagtcaacattatcagtgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctag 40890819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 32973996 - 32974045
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  32973996 acgaggactctgtaggatctagtgctcgtccaatggatagggatgcagct 32974045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 40891221 - 40891172
Alignment:
Q  2 acgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  40891221 acgaggactctgtaggatctagtgctcgtccaatgggtaaggatgcagct 40891172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 29617253 - 29617325
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| |||||||||||||||||||||||||||||||| | |||||   ||| |||||||| ||||||||||    
T  29617253 ttggagaaggtggaaaaggagtgggttcaattcaaagaattaaaggagcaagatattgaacaattgaaagagt 29617325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 27944965 - 27944893
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  27944965 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 27944893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 32974082 - 32974154
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  32974082 ttggagaaggtggaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 32974154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 4579418 - 4579346
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||||||||||| || ||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  4579418 ttggagaaggtggaaaaggaatgagttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 4579346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 40891136 - 40891064
Alignment:
Q  90 ttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagt 162  Q
    |||||| ||||| ||||||| |||||||||||||||||| | || ||   |||||||||||| ||||||||||    
T  40891136 ttggagaaggtgaaaaaggaatgggttcaattcaaagaattaaaagagcaagagattgaacaattgaaagagt 40891064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 6842 - 6958
Alignment:
Q  84 gctggcttggaggaggtggaaaaggagtgggttcaattcaaagaaatcaaggatagagagattgaacatttgaaagagtacaccaaggtgcaacaggaga 183  Q
    |||| |||||||||||||||||||||||||||| ||||||||||| | |||||  ||||||| ||||| ||||||||||  |||  |||| |||| ||||    
T  6842 gctgccttggaggaggtggaaaaggagtgggttgaattcaaagaattaaaggagcgagagatggaacaattgaaagagttaaccttggtgaaacaagaga 6941  T
Q  184 aaaacagattgaagaaa 200  Q
    |||||| ||||| ||||    
T  6942 aaaacaaattgatgaaa 6958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 367
Target Start/End: Original strand, 7045 - 7121
Alignment:
Q  290 aaatatttgtttgtattcggtcaaaattgtcagtgttgtctagctcccaatgtttacttcaataattgtcagtgttgt 367  Q
    ||||| |||||||||| ||||||||||||||||||||||||||  |||| ||||| ||| ||||||||||| ||||||    
T  7045 aaatagttgtttgtat-cggtcaaaattgtcagtgttgtctagtccccagtgtttgctttaataattgtcaatgttgt 7121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6762 - 6812
Alignment:
Q  1 cacgaggactctgtaggatctagtgctcgtccaatgggtagggaggcagct 51  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  6762 cacgaggactctgtaggatctagtgctcgtcaaatgggaggggaggcagct 6812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 273
Target Start/End: Original strand, 167191 - 167269
Alignment:
Q  195 aagaaaatgaaaatgtatctaaagttaagttctgaagagcatcttgatgacctgaaaaaagagctgttggaaaacttgg 273  Q
    |||||||||||||||||| ||||| |||||||||| |||||| | ||||||| ||| ||| || |||||||||| ||||    
T  167191 aagaaaatgaaaatgtatataaagctaagttctgaggagcatttcgatgaccggaagaaaaagttgttggaaaagttgg 167269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 166986 - 167020
Alignment:
Q  8 actctgtaggatctagtgctcgtccaatgggtagg 42  Q
    |||||||||||||||||||||||||||| ||||||    
T  166986 actctgtaggatctagtgctcgtccaattggtagg 167020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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