View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8579_low_3 (Length: 335)
Name: NF8579_low_3
Description: NF8579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8579_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 36201013 - 36200700
Alignment:
| Q |
16 |
atcagagacatgatatgatttcttttcctactag--tgtttgaagcagagttgacgaaaacttgtagttcaaacatgcacatcatatggaaagcaccatg |
113 |
Q |
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| T |
36201013 |
atcagagacatgatatgatttcttttcctactagactgtttgaagcagagttgacgaaaacttgtagttcaaacatgcacatcatatggaaagcaccatg |
36200914 |
T |
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| Q |
114 |
ttagattgattagtggttgacaggtgctgtgttggtgtagatgtactaagattttg-nnnnnnnctgtcaaacgcttgtgcttgtaatcttagatatgaa |
212 |
Q |
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| T |
36200913 |
ttggagtgattagtggttgacaggtgctgtgttggtgtagatgaactaagattttgttttttttctgtcaaacgcttgtgcttgtaatcttagatatgaa |
36200814 |
T |
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| Q |
213 |
taatatctgtcattatattactgtcatcaaatttattatttctttattcatttaatttccatatttagtctagtattgtaaatatcgtcaattggagcaa |
312 |
Q |
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| T |
36200813 |
taatatctgtcattatattactgtcatcaaattgattatttctttattcatttaa-ttccatatttagtctagtattgtaaataacgtcaattggagcaa |
36200715 |
T |
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| Q |
313 |
cgaactgttcttctc |
327 |
Q |
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| T |
36200714 |
cgaactgtttttctc |
36200700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 36207870 - 36207715
Alignment:
| Q |
16 |
atcagagacatgatatgatttcttttcctactagtgttt--gaagcagagttgacgaaaacttgtagttcaaacatgcacatcatatggaaagcaccatg |
113 |
Q |
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| T |
36207870 |
atcagagacatgacatgatttctcttccaaccagtgtgttagaagtagagttgatgaaaatttgaagtccaaacatgcacatcatatcgaaaacaccatg |
36207771 |
T |
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| Q |
114 |
ttagattgattagtggttgacaggtgctgtgttggtgtagatgtactaagattttg |
169 |
Q |
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| T |
36207770 |
ttggagagattagaggttcacatgtgatttgttgttgtatatgaactaagattttg |
36207715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 36184686 - 36184485
Alignment:
| Q |
16 |
atcagagacatgatatgatttcttttcctactag--tgtttgaagcagagttgacgaaaacttgtagttcaaacatgcacatcatatggaaagcaccatg |
113 |
Q |
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||||||||||||| ||||||| | |||| ||||| |||| ||||||||||||| ||||| || ||| |||||||| | |||||| |||| ||||||| |
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| T |
36184686 |
atcagagacatgacatgatttttcttccaactagagtgttagaagcagagttgatgaaaatctgaagtccaaacatgaatatcatacggaagacaccatg |
36184587 |
T |
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| Q |
114 |
ttagattgatt----agtggttgacaggtgctgtgttggtgtagatgtactaagattttgnnnnnnnctgtcaaacgcttgtgcttgtaatcttagatat |
209 |
Q |
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| T |
36184586 |
ttggagagattagagagaggttcacaagtgctttgttgttgtagatgaactaagattttg--tttttctgttaaatgcttgtgcttgtaatctaagatat |
36184489 |
T |
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| Q |
210 |
gaat |
213 |
Q |
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|||| |
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| T |
36184488 |
gaat |
36184485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 36213266 - 36213214
Alignment:
| Q |
48 |
agtgtttgaagcagagttgacgaaaacttgtagttcaaacatgcacatcatat |
100 |
Q |
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| T |
36213266 |
agtgtttgaagcagagttgataaaaatttgaagtccaaacatgcacatcatat |
36213214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 36213128 - 36213082
Alignment:
| Q |
256 |
ttattcatttaatttccatatttagtctagtattgtaaatatcgtca |
302 |
Q |
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| T |
36213128 |
ttattaatttaatttctatatttagtctagtcttgtaaataacgtca |
36213082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 36213190 - 36213145
Alignment:
| Q |
177 |
ctgtcaaacgcttgtgcttgtaatcttagatatgaataatatctgt |
222 |
Q |
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| T |
36213190 |
ctgtcaaatgcttgtgcttgaaatctatgatatgaataatatctgt |
36213145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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