View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8579_low_5 (Length: 260)
Name: NF8579_low_5
Description: NF8579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8579_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 53036130 - 53036373
Alignment:
| Q |
1 |
ttttttaaatatattttttctttgatcaagtagtttaaggccgaaaatgatgttgtttcctgtagcatagaaaagtgaattacgtgtgaggaacaaatat |
100 |
Q |
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| T |
53036130 |
ttttttaaatatattttttctttgatcaagtagtttaaggccgaaaatgatgttgtttcctttagcatagaaaagtgaattacgtgtgaggaacaaatat |
53036229 |
T |
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| Q |
101 |
agaagccaacttcaattgaataatccaatcagaacaacgtcaaattaattcataaatgaaatctgcatgtatcatgtacacattgcatgggttaatttca |
200 |
Q |
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| T |
53036230 |
agaagccaacttcaattgaataatccaatcagaacaacgtcaaattaattcataaatgaaatctgcatgtatcatgtacacattgcatgggttaatttca |
53036329 |
T |
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| Q |
201 |
agctaaaattccgactctttcatgcaacaaaaacatcatcacag |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53036330 |
agctaaaattccgactctttcatgcaacaaaaacatcatcacag |
53036373 |
T |
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