View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_high_1 (Length: 869)
Name: NF8580_high_1
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 337 - 853
Target Start/End: Complemental strand, 12794582 - 12794066
Alignment:
| Q |
337 |
acatgaaattcttatagaatgattacaacatcttgatatattgttcatacgataaacacaaaacataaactaacgacttacaaaatcaagaatagtgttt |
436 |
Q |
| |
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|||| ||||||||||| |||||||||||||| ||||| ||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
12794582 |
acataaaattcttataaaatgattacaacatgttgatctattgttcatacgatgaacataaaacaaaaactaacgacttacaaaatcaagaatagtgttt |
12794483 |
T |
|
| Q |
437 |
ctacaaccaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaacctcccccttcatcttccacagcttctccc |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12794482 |
ctacaaccaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaacctcccccttcatcttccacagcttctccc |
12794383 |
T |
|
| Q |
537 |
caaaacttctatgcccaaaatacccctccgcctccaccttctcccctccctccgtcacaaccaccaccggaaccctctcataaaacccacttcccacacc |
636 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12794382 |
caaaacttctatgcccaaaatacccctccgcctccaccttctcccctccctccgtcacaaccaccaccggaaccctctcataaaacccacttcccacacc |
12794283 |
T |
|
| Q |
637 |
ttcgaactcatccaacttaaccacagcgtcatccgaaaccgcgtaaacttctcccttcaccttatgacccgacccgggtaggttgatcaggtacggtatt |
736 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12794282 |
ttcgaactcatccaacttaaccacagcgtcatccgaaaccgcgtaaacttctcccttcaccttatgacccgacccgggtaggttgatcaggtacggtatt |
12794183 |
T |
|
| Q |
737 |
ccgtggggtccaatcaccagtggatacggtttctgtgtggagtatgtattcatgaaaacggcgtcgtctttggttttaagatcttccattaaaccgtggt |
836 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12794182 |
ccgtggggtccaatcaccagtggatacggtttctgtgtggagtatgtattcatgaaaacggcgtcgtctttggttttaagatcttccattaaaccgtggt |
12794083 |
T |
|
| Q |
837 |
tggggaatccttgtttc |
853 |
Q |
| |
|
||||||||||||||||| |
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| T |
12794082 |
tggggaatccttgtttc |
12794066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 337 - 853
Target Start/End: Complemental strand, 12731790 - 12731276
Alignment:
| Q |
337 |
acatgaaattcttatagaatgattacaacatcttgatatattgttcatacgataaacacaaaacataaactaacgacttacaaaatcaagaatagtgttt |
436 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
12731790 |
acataaaattcttataaaatgattacaacatgttgatctattgttcatacgatgaacacaa--caaaaactaacgacttacaaaatcaagaatagtgttt |
12731693 |
T |
|
| Q |
437 |
ctacaaccaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaacctcccccttcatcttccacagcttctccc |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12731692 |
ctacaaccaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaacctcccccttcatcttccacagcttctccc |
12731593 |
T |
|
| Q |
537 |
caaaacttctatgcccaaaatacccctccgcctccaccttctcccctccctccgtcacaaccaccaccggaaccctctcataaaacccacttcccacacc |
636 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12731592 |
caaaacttctatgcccaaaatacccctccgcctccaccttctcccctccctccgtcacaaccaccaccggaaccctctcataaaacccacttcccacacc |
12731493 |
T |
|
| Q |
637 |
ttcgaactcatccaacttaaccacagcgtcatccgaaaccgcgtaaacttctcccttcaccttatgacccgacccgggtaggttgatcaggtacggtatt |
736 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12731492 |
ttcgaactcatccaacttaaccacagcgtcatccgaaaccgcgtaaacttctcccttcaccttatgacccgacccgggtaggttgatcaggtacggtatt |
12731393 |
T |
|
| Q |
737 |
ccgtggggtccaatcaccagtggatacggtttctgtgtggagtatgtattcatgaaaacggcgtcgtctttggttttaagatcttccattaaaccgtggt |
836 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12731392 |
ccgtggggtccaatcaccagtggatacggtttctgtgtggagtatgtattcatgaaaacggcgtcgtctttggttttaagatcttccattaaaccgtggt |
12731293 |
T |
|
| Q |
837 |
tggggaatccttgtttc |
853 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
12731292 |
tggggaatccttgtttc |
12731276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 34 - 188
Target Start/End: Complemental strand, 12794996 - 12794847
Alignment:
| Q |
34 |
tgtatcatgacataactagggcatgaagcat--gtttgaattagtttcaaaaataaaagtagaaagataagtacgataagacacaacacaacataacagt |
131 |
Q |
| |
|
||||| |||||||||| ||||||||||| || |||||||||| ||||||||||||||||||||||||||| || ||||||||||||| ||||||| |
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| T |
12794996 |
tgtataatgacataaccagggcatgaagtatatgtttgaattaatttcaaaaataaaagtagaaagataag-----taggacacaacacaacttaacagt |
12794902 |
T |
|
| Q |
132 |
acttgatcacataaatcatagatagcacaagacgcaaacagcgtaaaccagtaacaa |
188 |
Q |
| |
|
|||| ||||| |||||||| |||| |||||| ||||| | | ||||||| |||||| |
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|
| T |
12794901 |
acttaatcac--aaatcataaatagaacaagatgcaaataacataaaccaataacaa |
12794847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 12732195 - 12732090
Alignment:
| Q |
34 |
tgtatcatgacataactagggcatgaagcat--gtttgaattagtttcaaaaataaaagtagaaagataagtacgataagacacaacacaacataacagt |
131 |
Q |
| |
|
||||| |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||||||||||| ||||||| |
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| T |
12732195 |
tgtataatgacataaccagggcatgaagcatatgtttgaattaatttcaaaaataaaagtagaaagataag-----taggacacaacacaacttaacagt |
12732101 |
T |
|
| Q |
132 |
acttgatcaca |
142 |
Q |
| |
|
|||| |||||| |
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|
| T |
12732100 |
acttaatcaca |
12732090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 12794811 - 12794749
Alignment:
| Q |
198 |
gatgccacaagattctactcatagtacaacaacatagaatatataccatcatctatgaagcaa |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
12794811 |
gatgccacaagattctactcatagtacaacaacatagaattaatacaatcatctatgaagcaa |
12794749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 12732010 - 12731948
Alignment:
| Q |
198 |
gatgccacaagattctactcatagtacaacaacatagaatatataccatcatctatgaagcaa |
260 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
12732010 |
gatgccataagattctactcatagtacaacaacatagaattaatacaatcatctatgaagcaa |
12731948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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