View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_high_11 (Length: 417)
Name: NF8580_high_11
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 23 - 403
Target Start/End: Complemental strand, 45245967 - 45245587
Alignment:
| Q |
23 |
aatgaaccatcatttgaactatagcatggcaaacccttctaaaattcaaatcatttgaattgaatatgatcgtcattttgcctcggcagttgaaattcaa |
122 |
Q |
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| T |
45245967 |
aatgaaccatcatttgaactatagcatggcaaacccttctaaaattcaaatcatttgaattgaatatgatcgtcattttgcatcggcagttgaaattcaa |
45245868 |
T |
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| Q |
123 |
agcaagattggtctttccaataatcagttgatcacaaataaatccttttttctctattccggacaccgccgaactttggttggagagagtaagttgacaa |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
45245867 |
agcaagattggtctttccaataatcagttgatcacaaataaatccttttttctctattccggacaccaccgaactttggttggagagagttagttgacaa |
45245768 |
T |
|
| Q |
223 |
agattaggagataaggaaacagggtgaggaaactggccatggaaattaaaccaagaaagtcctcaccaaaaccaatagaccataaaaaatgcattagaaa |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45245767 |
agattaggagataaggaaacagggtgaggaaactggccatggaaattaaaccaagaaagtcctcaccaaaaccaatagaccataaaaaatgcattagaaa |
45245668 |
T |
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| Q |
323 |
cagtgcaacatgtactacttacaaaattcatctttgttggtagatttaatcttatgaatgaaaaatacttaagcaggtagt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45245667 |
cagtgcaacatgtactacttacaaaattcatctttgttggtagatttaatcttatgaatgaaaaatgcttaagcaggtagt |
45245587 |
T |
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