View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8580_high_15 (Length: 331)
Name: NF8580_high_15
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_high_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 22399913 - 22399596
Alignment:
| Q |
1 |
acatatttagtcaaccattcatcatcacttgacctaatcaaactcaatgcttccatagcatcatcataagccgctggcaaccggtgctccggcgcgagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | |
|
|
| T |
22399913 |
acatatttagtcaaccattcatcatcacttgacctaatcaaactcaatgcttccatagcatcatcataagccgccggcaaccggtgctccggtgcgaggc |
22399814 |
T |
|
| Q |
101 |
gataatcgaccgaggcgacaactgcttcgacggtttccgccatttcagcacaaaaattgtggaacattgtggaggctgcacttagtacaatgaagccact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22399813 |
gataatcgaccgaggcgacaactgcttcgacggtttccgccatttcagcacaaaaattgtggaacattgtggaggctgcacttagtacaatgaagccact |
22399714 |
T |
|
| Q |
201 |
tccatgaaagaaaacaataagtggtagtagcttgttgtttaggtttgaaacatttgttgcttttttaggaagaaataatcgaagccatgtttggtttgat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22399713 |
tccatgaaagaaaacaataagtggtagtagcttgttgtttaggtttgaaacatttgttgcttttttaggtagaaataatcgaagccatgtttggtttgat |
22399614 |
T |
|
| Q |
301 |
tggttgatggtgtgatct |
318 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
22399613 |
tggttgatggtgagatct |
22399596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 22415747 - 22415439
Alignment:
| Q |
1 |
acatatttagtcaaccattcatcatcacttgacctaatcaaactcaatgcttccatagcatcatcataagccgctggcaaccggtgctccggcgcgagac |
100 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| ||||| || | |||||||||||| ||||| | |
|
|
| T |
22415747 |
acatatttagtcaaccattcatcttgacttgatctaatcaaactcaatgcttccatagcatcatcatatgccgccggtagccggtgctccggtgcgaggc |
22415648 |
T |
|
| Q |
101 |
gataatcgaccgaggcgacaactgcttcgacggtttccgccatttcagcacaaaaattgtggaacattgtggaggctgcacttagtacaatgaagccact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||||| ||| |||| |||| ||||| | ||||||||||||||| | || ||||||||||| |
|
|
| T |
22415647 |
gataatcgaccgaggcgacaactgcttcaacagtatccgccatatcaacacataaatcatggaagttggtggaggctgcactttgcacgatgaagccact |
22415548 |
T |
|
| Q |
201 |
tccatgaaagaaaacaataagtggtagtagcttgttgtttaggtttgaaacatttgttgcttttttaggaagaaataatcgaagccatgtttggtttgat |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
22415547 |
accatgaaagaaaacaataattggtagtagcttgttgtttaagtttgaaacatttgttgcttttttaggtaggaataaccgaagccatgtttggtttgat |
22415448 |
T |
|
| Q |
301 |
tggttgatg |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
22415447 |
tggttgatg |
22415439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University