View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_high_16 (Length: 328)
Name: NF8580_high_16
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_high_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 328
Target Start/End: Complemental strand, 43534079 - 43533767
Alignment:
| Q |
16 |
atgaagttgaataatgatatgatatgatatcaggttttgttttgttgaaattcaaaatcatgatatcaatcagtaagttacttaccagcaggagaacgaa |
115 |
Q |
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| T |
43534079 |
atgaagttgaataatgatatgatatgatatcaggttttgttttgttgaaattcaaaatcatgatatcaatcagtaagttacttaccagcaggagaacgaa |
43533980 |
T |
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| Q |
116 |
agtcgtagtctggaacttgaaaggcaggttcagagccaaggccaatctcagaaatgacagaagcaatgacagcactgagaatgactgtggaagtagtatt |
215 |
Q |
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| T |
43533979 |
agtcgtagtctggaacttgaaaggcgggttcagagccaaggccaatctcagaaatgacagaagcaatgacagcactgagaatgactgtggaagtagtatt |
43533880 |
T |
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| Q |
216 |
agtaagcgataaattagaagaatcagaatcagaaggccacaagacagactcaacagcgaagaaacaaccagcaacggcagcattgaaaccagcagagagg |
315 |
Q |
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| T |
43533879 |
agtaagcgataaattagaagaatcagaatcagaaggccacaagacagactcaacagcgaagaaacaaccagcaacggcagcattgaaaccagcagagagg |
43533780 |
T |
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| Q |
316 |
ccggcagcagatc |
328 |
Q |
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| T |
43533779 |
ccggcagcagatc |
43533767 |
T |
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