View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8580_high_20 (Length: 314)
Name: NF8580_high_20
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_high_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 18867328 - 18867609
Alignment:
| Q |
18 |
ttaagcgacctagattagtgttggatggttgtaaattgagatataaagaagctttgcaattgatagagagtcatactcaagcactttttgagcataataa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18867328 |
ttaagcgacctagattagtgttggatggttgtaaattgagatataaagaagctttgcaactgatagagagtcatactcaagccctttttgagcataataa |
18867427 |
T |
|
| Q |
118 |
ggaatgtggtttgaatgagtttgat---gatgatgaagaagatgataggtttattgaagcttcattttctagtataaagagactactatgggaaggtctt |
214 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18867428 |
ggaatgtggtttgaatgagtttgatgatgatgatgaagaagatgataggtttattgaagcttcattttctagtataaagagactactatgggaaggtctt |
18867527 |
T |
|
| Q |
215 |
gcttttggatcttttctgtggatgacagaagatttcattgatggaatatataagcttgaagaacgtgaagccaagtgaagga |
296 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18867528 |
gcttttggatcttttctgtggatggcagaagatttcattgatggaatatataagcttgaagaacgtgaagccaagtgaagga |
18867609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 18888238 - 18888335
Alignment:
| Q |
155 |
gatgataggtttattgaagcttcattttctagtataaagagactactatgggaaggtcttgcttttggatcttttctgtggatgacagaagatttcat |
252 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| ||||||||||||||| | |||||||||||||||||| |||| | |||||| | ||||||||||| |
|
|
| T |
18888238 |
gatgataagtttattgaagcttcatttactattataaagagactactctaagaaggtcttgcttttggaactttcccatggatggccgaagatttcat |
18888335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 3544930 - 3545011
Alignment:
| Q |
174 |
cttcattttctagtataaagagactactatgggaaggtcttgcttttggatcttttctgtggatgacagaagatttcattga |
255 |
Q |
| |
|
|||||||||||||| | ||||||||| | | ||||| | ||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
3544930 |
cttcattttctagtcttaagagactagtcttggaagctgttgcttttggatcttttctgtgggaaacagaagattacattga |
3545011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University