View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8580_high_24 (Length: 299)

Name: NF8580_high_24
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8580_high_24
NF8580_high_24
[»] chr8 (1 HSPs)
chr8 (15-299)||(44583429-44583713)


Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 44583429 - 44583713
Alignment:
Q  15 tcattaagcaagaaaagagagaagaatgtgtaattccacacaacacacgatcagcaacatcctaagaaaaaccccaaacaaaacactttcagtttcaaca 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44583429 tcattaagcaagaaaagagagaagaatgagtaattccacacaacacacgatcagcaaaatcctaagaaaaaccccaaacaaaacactttcagtttcaaca 44583528  T
Q  115 agacaagcaaaacaactacacgcacacatcgtaaaaacaaaaggaacattgcactccgacaacatcctcgtactctcactctactcaaatctcaacctct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44583529 agacaagcaaaacaactacacgcacacatcgtaaaaacaaaaggaacattgcactccgacaacatcctcgtactctcactctactcaaatctcaacctct 44583628  T
Q  215 tacaacattccctccacctcttcaactcccttccttctcctccaccacctctcgcatggtcttctataatcaaatgctacacttc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44583629 tacaacattccctccacctcttcaactcccttccttctcctccaccacctctcgcatggtcttctataatcaaatgctacacttc 44583713  T

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