View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8580_high_25 (Length: 276)

Name: NF8580_high_25
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8580_high_25
NF8580_high_25
[»] chr3 (10 HSPs)
chr3 (24-243)||(9996531-9996750)
chr3 (24-243)||(10217549-10217771)
chr3 (35-243)||(10227110-10227303)
chr3 (77-219)||(10137370-10137508)
chr3 (121-242)||(10102893-10103006)
chr3 (121-242)||(10213816-10213929)
chr3 (124-219)||(10515109-10515202)
chr3 (88-219)||(10087625-10087753)
chr3 (88-219)||(10194507-10194635)
chr3 (121-194)||(10221482-10221553)
[»] chr5 (6 HSPs)
chr5 (24-243)||(26797020-26797242)
chr5 (35-243)||(26800487-26800680)
chr5 (35-243)||(26808037-26808230)
chr5 (35-243)||(26815427-26815620)
chr5 (35-243)||(26823064-26823257)
chr5 (121-194)||(26816840-26816911)
[»] scaffold0045 (2 HSPs)
scaffold0045 (148-219)||(86260-86329)
scaffold0045 (213-242)||(86244-86273)
[»] chr8 (1 HSPs)
chr8 (121-160)||(11482813-11482852)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 243
Target Start/End: Complemental strand, 9996750 - 9996531
Alignment:
Q  24 tggtgttgttaggagttcgaacctcggatctcgcatatattacctaaggggtctattgaataaccatccaatgacatagctaaatattgtctccaataat 123  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  9996750 tggtgttgtcaggagttcgaacctcggatctcgcatatattatctaaggggtctattgaataaccatccaatgacatagccaaatatggtgtccaataat 9996651  T
Q  124 aataataattttgtgaatagttatttgagtagggccatttctttcaattatttgcacggttcatatctttaaatgatcatatttgaaaattgaaaattga 223  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9996650 aataataatttagtgaatagttatttgagtagggccatttctctcaattatttgcgcggttcatatctttaaatgatcatatttgaaaattgaaaattga 9996551  T
Q  224 aaaagtttagaacagtattc 243  Q
    ||||||||||||||||||||    
T  9996550 aaaagtttagaacagtattc 9996531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 24 - 243
Target Start/End: Complemental strand, 10217771 - 10217549
Alignment:
Q  24 tggtgttgttaggagttcgaacctcggatctcgcatatattacctaaggggtctattgaataaccatccaatgacatagctaaatattgtctccaataat 123  Q
    ||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  10217771 tggtggtgtaagtagttcgaacctcggatctcgcatatattatctaaggggtctattgaataaccatccaatgacatagccaaatatggtgtccaataat 10217672  T
Q  124 aataataat---tttgtgaatagttatttgagtagggccatttctttcaattatttgcacggttcatatctttaaatgatcatatttgaaaattgaaaat 220  Q
    |||||||||   || |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10217671 aataataataatttagtgaatagttatttgagtagggccatttctctcaattatttgcgcggttcatatctttaaatgatcatatttgaaaattgaaaat 10217572  T
Q  221 tgaaaaagtttagaacagtattc 243  Q
    |||||||||||||||||||||||    
T  10217571 tgaaaaagtttagaacagtattc 10217549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 10227303 - 10227110
Alignment:
Q  35 ggagttcgaacctcggatctcgcatatattacctaaggggtctattgaataaccatccaatgacatagctaaatattgtctccaataataataataattt 134  Q
    ||||||||||||||| ||||| |||||||||  |||||||||||||||| ||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  10227303 ggagttcgaacctcgaatctcacatatattatttaaggggtctattgaacaaccatccaatgacatagccaaatatggtgtccaataataataataattt 10227204  T
Q  135 tgtgaatagttatttgagtagggccatttctttcaattatttgcacggttcatatctttaaatgatcatatttgaaaattgaaaattgaaaaagtttaga 234  Q
                   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10227203 ---------------gagtagggccatttctttcaattatttgcgcggttcatatctttaaatgatcatatttgaaaattgaaaattgaaaaagtttaga 10227119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 219
Target Start/End: Complemental strand, 10137508 - 10137370
Alignment:
Q  77 tattgaataaccatccaatgacatagctaaatattgtctccaataataataataattttgtgaatagttatttgagtagggccatttctttcaattattt 176  Q
    |||||||  ||||||||||||||  || |||||| || ||||||||||| |||||||||| |||||||| |||||| ||||||| |||||||||||||||    
T  10137508 tattgaacgaccatccaatgaca--gcaaaatatggtgtccaataataaaaataattttgggaatagttctttgagcagggccagttctttcaattattt 10137411  T
Q  177 gcacggttcatatctttaaatgatcatatttgaaaattgaaaa 219  Q
    |  |||||  |||||||||||||||||||||||||||||||||    
T  10137410 g--cggttactatctttaaatgatcatatttgaaaattgaaaa 10137370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 242
Target Start/End: Complemental strand, 10103006 - 10102893
Alignment:
Q  121 aataataataattttgtgaatagttatttgagtagggccatttctttcaattatttgcacggttcatatctttaaatgatcatatttgaaaattgaaaat 220  Q
    |||||||||||||||||| ||||||||||||| ||||||| |||||||||| |||||  ||||| ||||||||| |||||||||||      ||||||||    
T  10103006 aataataataattttgtgcatagttatttgagcagggccacttctttcaatcatttg--cggttaatatctttatatgatcatatt------ttgaaaat 10102915  T
Q  221 tgaaaaagtttagaacagtatt 242  Q
    ||||||||||||||||| ||||    
T  10102914 tgaaaaagtttagaacaatatt 10102893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 242
Target Start/End: Complemental strand, 10213929 - 10213816
Alignment:
Q  121 aataataataattttgtgaatagttatttgagtagggccatttctttcaattatttgcacggttcatatctttaaatgatcatatttgaaaattgaaaat 220  Q
    |||||||||||||||||| ||||||||||||| ||||||| |||||||||| |||||  ||||| ||||||||| |||||||||||      ||||||||    
T  10213929 aataataataattttgtgcatagttatttgagcagggccacttctttcaatcatttg--cggttaatatctttatatgatcatatt------ttgaaaat 10213838  T
Q  221 tgaaaaagtttagaacagtatt 242  Q
    ||||||||||||||||| ||||    
T  10213837 tgaaaaagtttagaacaatatt 10213816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 10515202 - 10515109
Alignment:
Q  124 aataataattttgtgaatagttatttgagtagggccatttctttcaattatttgcacggttcatatctttaaatgatcatatttgaaaattgaaaa 219  Q
    ||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||||  | ||| ||||||||||||||||||| |||| |||||||||    
T  10515202 aataataatgttgtgaatagttatttgagcaggaccacttctttcaattatttg--ctgttaatatctttaaatgatcataattgataattgaaaa 10515109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 10087753 - 10087625
Alignment:
Q  88 catccaatgacatagctaaatattgtctccaataataataataattttgtgaatagtt-atttgagtaggg-ccatttctttcaattatttgcacggttc 185  Q
    |||||||||||||||  |||||| || |||||||||||||||   |||||||||| || |||| ||||||| ||| ||||||||||||||| ||   ||     
T  10087753 catccaatgacatagtcaaatatggtgtccaataataataat---tttgtgaataatttatttcagtaggggccacttctttcaattattttcat--tta 10087659  T
Q  186 atatctttaaatgatcatatttgaaaattgaaaa 219  Q
    |||||||| |||||||||||||||||||||||||    
T  10087658 atatctttgaatgatcatatttgaaaattgaaaa 10087625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 10194635 - 10194507
Alignment:
Q  88 catccaatgacatagctaaatattgtctccaataataataataattttgtgaatagtt-atttgagtaggg-ccatttctttcaattatttgcacggttc 185  Q
    |||||||||||||||  |||||| || |||||||||||||||   |||||||||| || |||||||||||| ||| ||||||||||||||| ||   ||     
T  10194635 catccaatgacatagtcaaatatggtgtccaataataataat---tttgtgaataatttatttgagtaggggccacttctttcaattattttcat--tta 10194541  T
Q  186 atatctttaaatgatcatatttgaaaattgaaaa 219  Q
    |||||||| ||||||||||||| |||||||||||    
T  10194540 atatctttgaatgatcatatttaaaaattgaaaa 10194507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 10221553 - 10221482
Alignment:
Q  121 aataataataattttgtgaatagttatttgagtagggccatttctttcaattatttgcacggttcatatcttta 194  Q
    |||||||||||||||||| ||||||||||||| ||||||| |||||||||| |||||  ||||| |||||||||    
T  10221553 aataataataattttgtgcatagttatttgagcagggccacttctttcaatcatttg--cggttaatatcttta 10221482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 24 - 243
Target Start/End: Complemental strand, 26797242 - 26797020
Alignment:
Q  24 tggtgttgttaggagttcgaacctcggatctcgcatatattacctaaggggtctattgaataaccatccaatgacatagctaaatattgtctccaataat 123  Q
    ||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  26797242 tggtggtgtaagtagttcgaacctcggatctcgcatatattatctaaggggtctattgaataaccatccaatgacatagccaaatatggtgtccaataat 26797143  T
Q  124 aataataat---tttgtgaatagttatttgagtagggccatttctttcaattatttgcacggttcatatctttaaatgatcatatttgaaaattgaaaat 220  Q
    |||||||||   || |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26797142 aataataataatttagtgaatagttatttgagtagggccatttctctcaattatttgcgcggttcatatctttaaatgatcatatttgaaaattgaaaat 26797043  T
Q  221 tgaaaaagtttagaacagtattc 243  Q
    |||||||||||||||||||||||    
T  26797042 tgaaaaagtttagaacagtattc 26797020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 26800680 - 26800487
Alignment:
Q  35 ggagttcgaacctcggatctcgcatatattacctaaggggtctattgaataaccatccaatgacatagctaaatattgtctccaataataataataattt 134  Q
    ||||||||||||||| ||||| |||||||||  |||||||||||||||| ||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  26800680 ggagttcgaacctcgaatctcacatatattatttaaggggtctattgaacaaccatccaatgacatagccaaatatggtgtccaataataataataattt 26800581  T
Q  135 tgtgaatagttatttgagtagggccatttctttcaattatttgcacggttcatatctttaaatgatcatatttgaaaattgaaaattgaaaaagtttaga 234  Q
                   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26800580 ---------------gagtagggccatttctttcaattatttgcgcggttcatatctttaaatgatcatatttgaaaattgaaaattgaaaaagtttaga 26800496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 26808230 - 26808037
Alignment:
Q  35 ggagttcgaacctcggatctcgcatatattacctaaggggtctattgaataaccatccaatgacatagctaaatattgtctccaataataataataattt 134  Q
    ||||||||||||||| ||||| |||||||||  |||||||||||||||| ||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  26808230 ggagttcgaacctcgaatctcacatatattatttaaggggtctattgaacaaccatccaatgacatagccaaatatggtgtccaataataataataattt 26808131  T
Q  135 tgtgaatagttatttgagtagggccatttctttcaattatttgcacggttcatatctttaaatgatcatatttgaaaattgaaaattgaaaaagtttaga 234  Q
                   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26808130 ---------------gagtagggccatttctttcaattatttgcgcggttcatatctttaaatgatcatatttgaaaattgaaaattgaaaaagtttaga 26808046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 26815620 - 26815427
Alignment:
Q  35 ggagttcgaacctcggatctcgcatatattacctaaggggtctattgaataaccatccaatgacatagctaaatattgtctccaataataataataattt 134  Q
    ||||||||||||||| ||||| |||||||||  |||||||||||||||| ||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  26815620 ggagttcgaacctcgaatctcacatatattatttaaggggtctattgaacaaccatccaatgacatagccaaatatggtgtccaataataataataattt 26815521  T
Q  135 tgtgaatagttatttgagtagggccatttctttcaattatttgcacggttcatatctttaaatgatcatatttgaaaattgaaaattgaaaaagtttaga 234  Q
                   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26815520 ---------------gagtagggccatttctttcaattatttgcgcggttcatatctttaaatgatcatatttgaaaattgaaaattgaaaaagtttaga 26815436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 26823257 - 26823064
Alignment:
Q  35 ggagttcgaacctcggatctcgcatatattacctaaggggtctattgaataaccatccaatgacatagctaaatattgtctccaataataataataattt 134  Q
    ||||||||||||||| ||||| |||||||||  |||||||||||||||| ||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  26823257 ggagttcgaacctcgaatctcacatatattatttaaggggtctattgaacaaccatccaatgacatagccaaatatggtgtccaataataataataattt 26823158  T
Q  135 tgtgaatagttatttgagtagggccatttctttcaattatttgcacggttcatatctttaaatgatcatatttgaaaattgaaaattgaaaaagtttaga 234  Q
                   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26823157 ---------------gagtagggccatttctttcaattatttgcgcggttcatatctttaaatgatcatatttgaaaattgaaaattgaaaaagtttaga 26823073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 26816911 - 26816840
Alignment:
Q  121 aataataataattttgtgaatagttatttgagtagggccatttctttcaattatttgcacggttcatatcttta 194  Q
    |||||||||||||||||| ||||||||||||| ||||||| |||||||||| |||||  ||||| |||||||||    
T  26816911 aataataataattttgtgcatagttatttgagcagggccacttctttcaatcatttg--cggttaatatcttta 26816840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 86329 - 86260
Alignment:
Q  148 ttgagtagggccatttctttcaattatttgcacggttcatatctttaaatgatcatatttgaaaattgaaaa 219  Q
    |||||||||||||  |||||||||||| |||  |||| ||||| |||||  |||||||||||||||||||||    
T  86329 ttgagtagggccacctctttcaattatgtgc--ggttaatatcattaaagaatcatatttgaaaattgaaaa 86260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 242
Target Start/End: Complemental strand, 86273 - 86244
Alignment:
Q  213 ttgaaaattgaaaaagtttagaacagtatt 242  Q
    ||||||||||||||||||||||||||||||    
T  86273 ttgaaaattgaaaaagtttagaacagtatt 86244  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 11482852 - 11482813
Alignment:
Q  121 aataataataattttgtgaatagttatttgagtagggcca 160  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  11482852 aataataataatgttgtgaatagttatttgagaagggcca 11482813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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