View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8580_high_26 (Length: 270)
Name: NF8580_high_26
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_high_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 3786068 - 3786309
Alignment:
| Q |
1 |
tgtttattcttctattctctttatctttgtcctttgatttgagtgagaatttgctatacacttgcgttgctagatatgttcttgattaaatattgttact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
3786068 |
tgtttattcttctattctctttatctttgtcctttgatttgagtgagaatttgctatacacttgcgttactagatatgttcttggttaaatattgttact |
3786167 |
T |
|
| Q |
101 |
tggatcatttgttgttatagtttgtcattgttatttgttccacctattgtcttgttgattttgcataagggttcaaattcataacaagtggagccaaatg |
200 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3786168 |
tggatcatttgttgttgttgtttgtcattgttatttgttccacgtattgtcttgttgattttgcataagggttcaaattcataacaagtggagcccaatg |
3786267 |
T |
|
| Q |
201 |
tggggcaacgaaacaaactcttcaagtgaacatcatgggtac |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3786268 |
tggggcaacgaaacaaactcttcaagtgaacatcatgggtac |
3786309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 38754205 - 38754296
Alignment:
| Q |
11 |
tctattctctttatctttgtcctttgatttgagtgagaatttgctatacacttgcgttgctagatatgttcttgattaaatattgttacttg |
102 |
Q |
| |
|
|||| ||||||||| ||||| ||||| ||||| | |||||||||||| || | |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
38754205 |
tctactctctttatttttgttctttgttttgattatcgatttgctatacattttgggtgctagatttgttcttggttaaatattgttacttg |
38754296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 35437811 - 35437878
Alignment:
| Q |
122 |
ttgtcattgttatttgttccacc--tattgtcttgttgattttgcataagggttcaaattcataacaa |
187 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| ||||| |
|
|
| T |
35437811 |
ttgtcattgttatttgttccaaaaatattgtcttgttgattttgtataagggttcgaattcacaacaa |
35437878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University