View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8580_high_27 (Length: 269)
Name: NF8580_high_27
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_high_27 |
 | |
|
| [»] scaffold0421 (1 HSPs) |
| | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
| [»] scaffold0186 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0421 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 13990 - 14247
Alignment:
| Q |
1 |
atcataagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13990 |
atcataagttttccccaaaatttttagtttgattgtggttgttcctctaaatgttatcacatagagttggtgtcaaattcttaatcacaagaattgcggt |
14089 |
T |
|
| Q |
101 |
cacacttttgttaaaaaatggtcaaattgagagaaatttgaagg-nnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataa--atgtt |
197 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
14090 |
cacatttttgttaaaaaatggtcaaattgtgagaaatttgaaggaaaaaaaatgtggttacgtctatgttaaaatatggttaagtgcagataattttttt |
14189 |
T |
|
| Q |
198 |
tgtcagtatgtctatgataacaaagataggaaaatattaacttgtcacagtattatct |
255 |
Q |
| |
|
| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
14190 |
tttcagtatgtctatggtaacaaagataagaaaacattaacttgtcacagtattatct |
14247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 115756 - 115504
Alignment:
| Q |
1 |
atcataagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggt |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| |||||||| ||| |
|
|
| T |
115756 |
atcataagttttccccaatttttgtagtttgattgtggttgttcctctaaatgatatcacgtagagttggtgtcaaatccttaatcaaaagaattgtggt |
115657 |
T |
|
| Q |
101 |
cacacttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgt |
200 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
115656 |
cacacttgtgttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaatgtggttacgtctatgttaaaatatggttaagttcagataaatttttgt |
115557 |
T |
|
| Q |
201 |
cagtatgtctatgataacaaagataggaaaatattaacttgtcacagtattat |
253 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
115556 |
cagtatgtctatgataacaaagatagggaaacattaacttgtcacagtattat |
115504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 13811443 - 13811695
Alignment:
| Q |
1 |
atcataagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggt |
100 |
Q |
| |
|
|||||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||| | ||| |
|
|
| T |
13811443 |
atcataagttctccccaatttttatagtttgattgtggttgttcctctaaatgatatcacgtagagttggtgtcaaattcttaatcaaaagaatcgtggt |
13811542 |
T |
|
| Q |
101 |
cacacttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgt |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| ||| || |||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
13811543 |
cacacttgtgttaaaaaatggtcaaattgttggaaatttggaggaaaaaaatgcggttacgtctatgttaaaatgtggttaagtgcagataaatttttgt |
13811642 |
T |
|
| Q |
201 |
cagtatgtctatgataacaaagataggaaaatattaacttgtcacagtattat |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
13811643 |
cagtatgtctatgataacaaagataggaaaacattaacttgtcacaatattat |
13811695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 12213348 - 12213098
Alignment:
| Q |
1 |
atcataagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggt |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| |||||||||||||||| |||||||| |||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
12213348 |
atcataagttttccccaatttttgtagtttgattgtagttgttcctctaaatgatatcacgt---gttggtgtcaaattcttaatcaaaagaattgtggt |
12213252 |
T |
|
| Q |
101 |
cacacttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnn-tgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttg |
199 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
12213251 |
cacacttgtgttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaaatgtggttacgtctatgttaaaatatggttaagtgaagataaatttttg |
12213152 |
T |
|
| Q |
200 |
tcagtatgtctatgataacaaagataggaaaatattaacttgtcacagtattat |
253 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
12213151 |
tcagtatgtctatgataacaaagataggataacattaacttgtcacagtattat |
12213098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 4270567 - 4270356
Alignment:
| Q |
5 |
taagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcaca |
104 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
4270567 |
taagctttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtgtcaaattcttaatcaaaagaattgtggtcaca |
4270468 |
T |
|
| Q |
105 |
cttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagt |
204 |
Q |
| |
|
||| |||||||||||||||||| || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
4270467 |
cttgtgttaaaaaatggtcaaagtgttggaaatttgaaagaaaaaaatgtggttacgtctatgttaaaatatggttaagtgcagataaatttttgtcggt |
4270368 |
T |
|
| Q |
205 |
atgtctatgata |
216 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4270367 |
atgtctatgata |
4270356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 31397611 - 31397366
Alignment:
| Q |
1 |
atcataagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggt |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
31397611 |
atcataagttttccccaatttttgtagtttgattgtggttgttcctctaaatgatatcacttagagttggtgtcaaattcttaatcaaaagaattgtggt |
31397512 |
T |
|
| Q |
101 |
cacacttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgt |
200 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31397511 |
cacacttgtgttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaatgtggttacgtatatgttaaaatatggttaagtgcagataaatttttgt |
31397412 |
T |
|
| Q |
201 |
cagtatgtctatgataacaaagataggaaaatattaacttgtcaca |
246 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31397411 |
aagtatgtatatgataacaaagataggaaaacattaacttgtcaca |
31397366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 2499868 - 2500120
Alignment:
| Q |
1 |
atcataagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggt |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
2499868 |
atcataagttttccccaatttttgtagtttgattgtggttgttactctaaatgatatcacgtagagttggtgtcaaattcttaatcaaaagaattgtggt |
2499967 |
T |
|
| Q |
101 |
cacacttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgt |
200 |
Q |
| |
|
||||||| |||||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
2499968 |
cacacttgtgttaaaaaatggtcaaagtgttgaaaatttgaaggaaaaaaatgtggttacgtctacgttaaaatatggttaagtgcagataaatttttgt |
2500067 |
T |
|
| Q |
201 |
cagtatgtctatgataacaaagataggaaaatattaacttgtcacagtattat |
253 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
2500068 |
cagtgtgtatatgataacaaagataggaaaacattaacttgtcacaatattat |
2500120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 2503655 - 2503403
Alignment:
| Q |
1 |
atcataagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggt |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||| |||||||| |||||||| ||| |
|
|
| T |
2503655 |
atcataagttttccccaatttttgtagtttgattgtggttgttactctaaatgatatcacgtagagttggtgtcaaatacttaatcaaaagaattgtggt |
2503556 |
T |
|
| Q |
101 |
cacacttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgt |
200 |
Q |
| |
|
||||||| |||||||||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2503555 |
cacacttgtgttaaaaaatggtcaaagtgttggaaatttaaaggtaaaaaatgtggttacgtctatgttaaaatatggttaagtgcagataaatttttgt |
2503456 |
T |
|
| Q |
201 |
cagtatgtctatgataacaaagataggaaaatattaacttgtcacagtattat |
253 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
2503455 |
cagtgtgtatatgataacaaagataggaaaacattaacttgtcacaatattat |
2503403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 22242262 - 22242017
Alignment:
| Q |
1 |
atcataagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggt |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
22242262 |
atcataagttttccccaatttttgtagtttgattgtggttgttcctctaaatgatatcacttagagttggtgtcaaattcttaatcaaaagaattgtggt |
22242163 |
T |
|
| Q |
101 |
cacacttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgt |
200 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22242162 |
cacacttgtgttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaatgtggttacgtatatgttaaaatatggttaagtgcagataaatttttgt |
22242063 |
T |
|
| Q |
201 |
cagtatgtctatgataacaaagataggaaaatattaacttgtcaca |
246 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22242062 |
aagtatgtatatgataacaaagataggaaaacattaacttgtcaca |
22242017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 6609935 - 6609724
Alignment:
| Q |
5 |
taagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcaca |
104 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||| | |
|
|
| T |
6609935 |
taagctttccccaatttttttagtttgattgcggttgttcctctaaatgttatcacatagagttagtgtcaaattcttaatcaaaagaattgtggtcaaa |
6609836 |
T |
|
| Q |
105 |
cttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagt |
204 |
Q |
| |
|
||| |||||||||||||||||| || |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6609835 |
cttgtgttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaatgtggctacgtctatgttaaaatatggttaagtgcagataaatttttgtcagt |
6609736 |
T |
|
| Q |
205 |
atgtctatgata |
216 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6609735 |
atgtctatgata |
6609724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 6624193 - 6624404
Alignment:
| Q |
5 |
taagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcaca |
104 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||| | |
|
|
| T |
6624193 |
taagctttccccaatttttttagtttgattgcggttgttcctctaaatgttatcacatagagttagtgtcaaattcttaatcaaaagaattgtggtcaaa |
6624292 |
T |
|
| Q |
105 |
cttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagt |
204 |
Q |
| |
|
||| |||||||||||||||||| || |||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6624293 |
cttgtgttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaatgtggctacgtctatattaaaatatggttaagtgcagataaatttttgtcagt |
6624392 |
T |
|
| Q |
205 |
atgtctatgata |
216 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6624393 |
atgtctatgata |
6624404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 41551822 - 41551610
Alignment:
| Q |
5 |
taagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcaca |
104 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
41551822 |
taagctttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtgtcaaattcttaatcaaaagaattgtggtcaca |
41551723 |
T |
|
| Q |
105 |
cttttgttaaaaaatggtcaaattgagagaaatttg-aaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcag |
203 |
Q |
| |
|
||| |||||||||||||||||| || |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||||| | |
|
|
| T |
41551722 |
cttgtgttaaaaaatggtcaaagtgttggaaatttgaaagaaaaaaaatgtggttacgtctatgttaaaatacggttaagtgcagataaatttttgtcgg |
41551623 |
T |
|
| Q |
204 |
tatgtctatgata |
216 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41551622 |
tatgtctatgata |
41551610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 30213 - 29959
Alignment:
| Q |
1 |
atcataagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggt |
100 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
30213 |
atcataagttttccctaatttttgtagtttgattgtggttgttcctctaaatgatatcacgtagagttggtgtcaaattcttaatcaaaagaattgtggt |
30114 |
T |
|
| Q |
101 |
cacacttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatat--ggttaagtgcagataaatgttt |
198 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| | ||| |
|
|
| T |
30113 |
cacacttatgttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaatgtggttacgtctatgttaaaatatggggttatgtgcagataatttttt |
30014 |
T |
|
| Q |
199 |
gtcagtatgtctatgataacaaagataggaaaatattaacttgtcacagtattat |
253 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30013 |
gtcagtatgtctatggtaacaaagataggaaaacattaacttgtcacagtattat |
29959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 19145952 - 19146163
Alignment:
| Q |
5 |
taagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcaca |
104 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
19145952 |
taagctttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtgtcaaattcttaatcaaaagaattgtggtcaca |
19146051 |
T |
|
| Q |
105 |
cttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagt |
204 |
Q |
| |
|
||| |||||||||||||||||| || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
19146052 |
cttgtgttaaaaaatggtcaaagtgttggaaatttgaaagaaaaaaatgtggttacgtctatgttaaaatatggttaagtgcagataaatttttgtcggt |
19146151 |
T |
|
| Q |
205 |
atgtctatgata |
216 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19146152 |
atgtctatgata |
19146163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 23673288 - 23673499
Alignment:
| Q |
5 |
taagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcaca |
104 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
23673288 |
taagctttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtgtcaaattcttaatcaaaagaattgtggtcaca |
23673387 |
T |
|
| Q |
105 |
cttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagt |
204 |
Q |
| |
|
||| |||||||||||||||||| || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
23673388 |
cttgtgttaaaaaatggtcaaagtgttggaaatttgaaagaaaaaaatgtggttacgtctatgttaaaatatggttaagtgcagataaatttttgtcggt |
23673487 |
T |
|
| Q |
205 |
atgtctatgata |
216 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23673488 |
atgtctatgata |
23673499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 55045121 - 55044909
Alignment:
| Q |
5 |
taagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcaca |
104 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||| ||||||| |
|
|
| T |
55045121 |
taagctttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtgtcaaatttttaatcaaaagaattgtggtcaca |
55045022 |
T |
|
| Q |
105 |
cttttgttaaaaaatggtcaaattgagagaaatttg-aaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcag |
203 |
Q |
| |
|
||| |||||||||||||||||| || |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||||| | |
|
|
| T |
55045021 |
cttgtgttaaaaaatggtcaaagtgttggaaatttgaaagaaaaaaaatgtggttacgtctatgttaaaatacggttaagtgcagataaatttttgtcgg |
55044922 |
T |
|
| Q |
204 |
tatgtctatgata |
216 |
Q |
| |
|
||||||||||||| |
|
|
| T |
55044921 |
tatgtctatgata |
55044909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 78 - 253
Target Start/End: Original strand, 22043803 - 22043977
Alignment:
| Q |
78 |
ttcttaatcacaagaattgcggtcacacttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatg |
177 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||||||||||||||||| || |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
22043803 |
ttcttaatcaaaagaattgtggtcacacttgtgttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaatgtggtcacgtctatgttaaaatatc |
22043902 |
T |
|
| Q |
178 |
gttaagtgcagataaatgtttgtcagtatgtctatgataacaaagataggaaaatattaacttgtcacagtattat |
253 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22043903 |
gttaagtgcagataaat-tttgtcagtatgtctatgataacaaagataggaaaacattaacttgtcacagtattat |
22043977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 19849378 - 19849134
Alignment:
| Q |
1 |
atcataagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagag--ttgatgtcaaattcttaatcacaagaattgcg |
98 |
Q |
| |
|
|||||||| |||||||||||| |||||| || | |||||||||||||||||| |||||||||||| || ||||||| ||||||||| |||||||| | |
|
|
| T |
19849378 |
atcataaggtttccccaaattatttagtctgtctttggttgttcctctaaatgatatcacgtagagagttagtgtcaaactcttaatcaaaagaattgtg |
19849279 |
T |
|
| Q |
99 |
gtcacacttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgttt |
198 |
Q |
| |
|
||||||||||||||||||||||||| || || | ||||||||| | ||||||||||||| ||||||||||||| |||||||| |||| | ||| |
|
|
| T |
19849278 |
gtcacacttttgttaaaaaatggtc-aagtgctaaaaatttgaa-gaaaaaaatgtggttacgtctttgttaaaatatggctaagtgcatataatttttt |
19849181 |
T |
|
| Q |
199 |
gtcagtatgtctatgataacaaagataggaaaatattaacttgtcac |
245 |
Q |
| |
|
|| |||||| |||| |||||||| ||||||||| ||||||||||||| |
|
|
| T |
19849180 |
gttagtatgcctatcataacaaacataggaaaacattaacttgtcac |
19849134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 22043439 - 22043522
Alignment:
| Q |
1 |
atcataagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaa |
84 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| |
|
|
| T |
22043439 |
atcataagttttccccaaattttgtagtttgattgtggttgttcctctaaatgatatcacgtagagttggtgtcaatttcttaa |
22043522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 78 - 253
Target Start/End: Original strand, 44354190 - 44354364
Alignment:
| Q |
78 |
ttcttaatcacaagaattgcggtcacacttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatg |
177 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||||||||||||||||| || |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
44354190 |
ttcttaatcaaaagaattgtggtcacacttgtgttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaatgtggtcacgtctatgttaaaatatc |
44354289 |
T |
|
| Q |
178 |
gttaagtgcagataaatgtttgtcagtatgtctatgataacaaagataggaaaatattaacttgtcacagtattat |
253 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44354290 |
gttaagtgcagataaat-tttgtcagtatgtctatgataacaaagataggaaaacattaacttgtcacagtattat |
44354364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 44353818 - 44353901
Alignment:
| Q |
1 |
atcataagttttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaa |
84 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| |
|
|
| T |
44353818 |
atcataagttttccccaaattttgtagtttgattgtggttgttcctctaaatgatatcacgtagagttggtgtcaatttcttaa |
44353901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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