View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_high_4 (Length: 525)
Name: NF8580_high_4
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Original strand, 18171398 - 18171896
Alignment:
| Q |
18 |
catgatatgaagatttaccttgcaaagagggaactgactcgtctgagacgccataaacgaagcatgtcaagaattctgaatccaaactcgctgctatgat |
117 |
Q |
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| T |
18171398 |
catgatatgaagatttaccttgcaaagagtgaactgactcgtctgagacgccataaacgaagcatgtcaagaattctgaatccaaactcgctgctatgat |
18171497 |
T |
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| Q |
118 |
cagtgaatatggagctaatggcttgaagaggtgcagttgaacaaacatcaaagataaaccaggtacataggtacctgaaatcgaagtttttaggggaaga |
217 |
Q |
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| T |
18171498 |
cagtgaatatggagctaatggcttgaagaggtgcagttgaacaaacatcaaagataaaccaggtacataggtacctgaaatcgaagtttttatgggaaga |
18171597 |
T |
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| Q |
218 |
agnnnnnnntaattcttgtcaaattttttatttgataatttaaaattcattttatttacaaggaaaaaagaaataacatagtgaagtggttagatatgta |
317 |
Q |
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| T |
18171598 |
agaaaaaaataattcttgtcaaattttttatttgataatttaaaattcattttatttacaaggaaaaaagaaataacatagtgaagtggttagatatgta |
18171697 |
T |
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| Q |
318 |
cctttttgcaattttcttatgatcatcaataagaaggtaagaatggttatcaagatatgcaacaaagaatgtcatcactatgtcaattgcaaagaaacca |
417 |
Q |
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| T |
18171698 |
cctttttgcaattttcttatgatcatcaataagaaggtaagaatggttatcaagatatgcaacaaagaatgtcatcactatgtcaattgcaaagaaacca |
18171797 |
T |
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| Q |
418 |
ttcacaatgttatctatgatgaatagtgtgtcatgtttttgaggcagaaaagcaaattgaaaggggcatatccatgcagagtaaagcactagaattatc |
516 |
Q |
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| T |
18171798 |
ttcacaatgttatctatgatgaatagtgtgtcatgtttttgaggcagaaaagcaaattgaaaggggcatatccatgcagagtaaagcactagaattatc |
18171896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 444
Target Start/End: Original strand, 6388154 - 6388275
Alignment:
| Q |
323 |
ttgcaattttcttatgatcatcaataagaaggtaagaatggttatcaagatatgcaacaaagaatgtcatcactatgtcaattgcaaagaaaccattcac |
422 |
Q |
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||||||||||||| |||||||||| ||||| ||||||| |||| | |||||||| |||||||| | ||| ||||| || || ||||| ||||| || |
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| T |
6388154 |
ttgcaattttctttggatcatcaatgagaagagaagaatgactatcgtggtatgcaacgaagaatgtaagcacgatgtcgatggcgaagaagccattgac |
6388253 |
T |
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| Q |
423 |
aatgttatctatgatgaatagt |
444 |
Q |
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| T |
6388254 |
aatgttgtctatgatgaatagt |
6388275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 346
Target Start/End: Complemental strand, 42966406 - 42966371
Alignment:
| Q |
311 |
atatgtacctttttgcaattttcttatgatcatcaa |
346 |
Q |
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| T |
42966406 |
atatgtacctttttgcaattttcttatcatcatcaa |
42966371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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