View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_high_42 (Length: 228)
Name: NF8580_high_42
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 11988000 - 11988183
Alignment:
| Q |
1 |
tgaatcctctttattatgttcctagttctgtttatgtattggactggaattgttttgttttgctggcttatgtgttggattaaatccaatttcatagatt |
100 |
Q |
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| T |
11988000 |
tgaatcctctttattatgttcctagttctgtttatgtattggactggaattgttttgttttgctggcttatgcgttggattaaatccaatttcatagatt |
11988099 |
T |
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| Q |
101 |
gggggtttggatttgtttgttggattttcannnnnnnnaggtttcgatgtggtaaaaataaccattcataaaatcaaatcaagt |
184 |
Q |
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| T |
11988100 |
gggagtttggatttgtttgttggattttcattttttttaggtttcgatgtggtaaaaataaccattcataaaatcaaatcaagt |
11988183 |
T |
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