View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_high_5 (Length: 515)
Name: NF8580_high_5
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 208 - 413
Target Start/End: Original strand, 43712503 - 43712708
Alignment:
| Q |
208 |
gttcttcgttatcggaatcgcgatgatgattacgctttcggcgtgtgtaaacgaagtaaccgtttatctgaatcttacttttgcatgtgtcggtttccat |
307 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |
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| T |
43712503 |
gttcttcgttatgggaatcgcgatgatgattatgctttcggcgtgtgtaaacgaagtaaccgtttatctgaatcttactcttgaatgtgtcggtttacat |
43712602 |
T |
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| Q |
308 |
gggggaggttaatatgaagaagagggggtgaatttttgaggaattggtggaaggtgcattcaaggtttggattgcggaggaaagaaagtgaaggcagcga |
407 |
Q |
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| T |
43712603 |
ggaggaggttaatctgaagaagagggggtgaattattgaggaattggtggaaggtgcattgaaggtttggattagggaggaaagaaagtgaaggcagcga |
43712702 |
T |
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| Q |
408 |
ggcttt |
413 |
Q |
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|||||| |
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| T |
43712703 |
ggcttt |
43712708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 43712278 - 43712443
Alignment:
| Q |
11 |
ggacatcaacaacaggaacaccatcaagaaaaccagtatcaaaaggctcgttcatggtcaaccacttctcaccaaccgtttcgttcttctcaatcttaac |
110 |
Q |
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|||||| ||||||| ||||||||||||||||| |||||| || | || | ||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
43712278 |
ggacataaacaacaagaacaccatcaagaaaatcagtataaataagcaccttcatggtcaaccacttctcaccaaccatttcgtttttctcaatcttaac |
43712377 |
T |
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| Q |
111 |
actctcaacaacgagtttagcagcagcagaaacatcttcacatgaataaactcgcaccttaaacga |
176 |
Q |
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| T |
43712378 |
agtctcagcagagagtttagcagcagcagaaacatcttcatccgaatcaactttcaccttaaacga |
43712443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 438 - 501
Target Start/End: Original strand, 43712760 - 43712823
Alignment:
| Q |
438 |
ttgaaagcaaaaagtttggaagggattgaatgttagaagaaggaaactttcagggtcaagtttg |
501 |
Q |
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| T |
43712760 |
ttgaaagcaaatagtttgaaagagattgaatgtgagaagaagaaaagttttagggtcaagtttg |
43712823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 208 - 413
Target Start/End: Complemental strand, 26272358 - 26272153
Alignment:
| Q |
208 |
gttcttcgttatcggaatcgcgatgatgattacgctttcggcgtgtgtaaacgaagtaaccgtttatctgaatcttacttttgcatgtgtcggtttccat |
307 |
Q |
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|||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||| |||| ||| |
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| T |
26272358 |
gttcttcgttctcgaaatcgcgatgatgattatgctttcggcgtgtgtaaacgaagtaaccatttatctgaatcttattcttgaatgtgtcagtttacat |
26272259 |
T |
|
| Q |
308 |
gggggaggttaatatgaagaagagggggtgaatttttgaggaattggtggaaggtgcattcaaggtttggattgcggaggaaagaaagtgaaggcagcga |
407 |
Q |
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|| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| || ||||| |
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| T |
26272258 |
ggaggaggttaatctgaagaagagggggtgaattattgaggaattggtggaaggtgcattgaaggtttggattagggaggaaagaaaatgatggtagcga |
26272159 |
T |
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| Q |
408 |
ggcttt |
413 |
Q |
| |
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|||||| |
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| T |
26272158 |
ggcttt |
26272153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 26272583 - 26272444
Alignment:
| Q |
11 |
ggacatcaacaacaggaacaccatcaagaaaaccagtatcaaaaggctcgttcatggtcaaccacttctcaccaaccgtttcgttcttctcaatcttaac |
110 |
Q |
| |
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|||||| ||||||| ||||||||||||||||| |||||| |||| |||| ||||||||||||||||||||||||| | ||||||| |||||||||||||| |
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| T |
26272583 |
ggacataaacaacaagaacaccatcaagaaaatcagtataaaaaagctccttcatggtcaaccacttctcaccaatcatttcgtttttctcaatcttaac |
26272484 |
T |
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| Q |
111 |
actctcaacaacgagtttagcagcagcagaaacatcttca |
150 |
Q |
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||||||| || ||||||||||||||||||||||||||||| |
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| T |
26272483 |
actctcagcagcgagtttagcagcagcagaaacatcttca |
26272444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 501
Target Start/End: Complemental strand, 26272101 - 26272038
Alignment:
| Q |
438 |
ttgaaagcaaaaagtttggaagggattgaatgttagaagaaggaaactttcagggtcaagtttg |
501 |
Q |
| |
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||||||||||| |||||| ||| |||||||||| |||||||| ||| ||||||||||||||||| |
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| T |
26272101 |
ttgaaagcaaatagtttgaaagagattgaatgtgagaagaagaaaagtttcagggtcaagtttg |
26272038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 9e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 27196491 - 27196281
Alignment:
| Q |
12 |
gacatcaacaacaggaacaccatcaagaaaaccagtatcaaaaggctcgttcatggtcaaccacttctcaccaaccgtttcgttcttctcaatcttaaca |
111 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27196491 |
gacataaacaaccggaacaccatcaagaaaaccagtatcaaaaagctccttcatagtcaaccacttctcaccaaccgtttcgttcttctcaatcttaaca |
27196392 |
T |
|
| Q |
112 |
ctctcaacaacgagtttagcagcagcagaaacatcttcacatgaataaactcgcaccttaaacgacggccgccact--------gaagtccatttaacga |
203 |
Q |
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|||||| || |||||||||||||||| ||||||||||||| ||||| |||| |||||||||||||||||||| | |||||||||||||||| |
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| T |
27196391 |
ctctcagcagcgagtttagcagcagctgaaacatcttcacctgaatcaactttcaccttaaacgacggccgccgttgccgtttcgaagtccatttaacga |
27196292 |
T |
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| Q |
204 |
cgtcgttcttc |
214 |
Q |
| |
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||||||||||| |
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| T |
27196291 |
cgtcgttcttc |
27196281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 208 - 360
Target Start/End: Complemental strand, 27196243 - 27196091
Alignment:
| Q |
208 |
gttcttcgttatcggaatcgcgatgatgattacgctttcggcgtgtgtaaacgaagtaaccgtttatctgaatcttacttttgcatgtgtcggtttccat |
307 |
Q |
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|||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27196243 |
gttcttcgttatcgaaatcgcggtgatgattacgctttctgcgtgtgtaaacgaagtaaccgtttatctgaatcttactcttgcatgtgtcggtttccat |
27196144 |
T |
|
| Q |
308 |
gggggaggttaatatgaagaagagggggtgaatttttgaggaattggtggaag |
360 |
Q |
| |
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||||||||| ||| |||||||||||||||||||| ||||||||||||| |||| |
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| T |
27196143 |
gggggaggtgaatctgaagaagagggggtgaattattgaggaattggtagaag |
27196091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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