View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8580_high_7 (Length: 508)

Name: NF8580_high_7
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8580_high_7
NF8580_high_7
[»] chr2 (5 HSPs)
chr2 (25-388)||(32489203-32489568)
chr2 (328-388)||(44883049-44883109)
chr2 (162-234)||(14699313-14699387)
chr2 (461-497)||(32489096-32489132)
chr2 (165-240)||(12747225-12747302)
[»] chr5 (1 HSPs)
chr5 (160-256)||(26206569-26206667)
[»] chr1 (1 HSPs)
chr1 (314-379)||(41341689-41341754)
[»] chr6 (1 HSPs)
chr6 (316-378)||(11527092-11527151)
[»] chr4 (1 HSPs)
chr4 (322-369)||(42877865-42877912)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 25 - 388
Target Start/End: Complemental strand, 32489568 - 32489203
Alignment:
Q  25 ttaccgagcagaactttgtggtgctatgaaagcaatagaaactgcatttgnnnnnnnn-ggttaa-tctttagctagagtcagattcagcgttagttgtg 122  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||||||||    
T  32489568 ttaccaagcagaactttgtggtgctatgaaagcaatagaaactgcatttgaaaaaaaaaggttaaatctttagctagagtcagattcagcgttagttgtg 32489469  T
Q  123 caagcattcaagtctactaacttaatttcttggcaagttagaaatatgaattgtatagttactcatatataaggaaggaaaccaggtaacagatttcctt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32489468 caagcattcaagtctactaacttaatttcttggcaagttagaaatatgaattgtatagttactcatatataaggaaggaaaccaggtaacagatttcctt 32489369  T
Q  223 gcaaactttggtctatctttaaaatcttatgtttactggcctaatatatctttatttgcaagggaaacttatgtcaagagcacaattgttatacctaatt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32489368 gcaaactttggtctatctttaaaatcttatgtttactggcctaatatatctttatttgcaagggaaacttatgtcaagagcacaattgttatacctaatt 32489269  T
Q  323 ttaggttttcttcttcttgagggagttttggtttggtcccctccctcatttttgtacttaatctcc 388  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32489268 ttaggttttcttcttcttgagggagttttggtttggttccctccctcatttttgtacttaatctcc 32489203  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 44883049 - 44883109
Alignment:
Q  328 ttttcttcttcttgagggagttttggtttggtcccctccctcatttttgtacttaatctcc 388  Q
    ||||| ||||||||||||| | |||||||||||||||||||| ||||||||| || |||||    
T  44883049 ttttcatcttcttgagggaatcttggtttggtcccctccctcttttttgtacctattctcc 44883109  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 14699313 - 14699387
Alignment:
Q  162 agaaatatgaattgtatagttactcata--tataaggaaggaaaccaggtaacagatttccttgcaaactttggt 234  Q
    |||||||||||||||||||||||| |||  |||| |||||| || || ||| |||||| ||||||||||||||||    
T  14699313 agaaatatgaattgtatagttacttatatctatagggaagggaatcaagtagcagattcccttgcaaactttggt 14699387  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 497
Target Start/End: Complemental strand, 32489132 - 32489096
Alignment:
Q  461 tagataaaaagatcaaaagttaagtctgatgtccatc 497  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32489132 tagataaagagatcaaaagttaagtctgatgtccatc 32489096  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 12747225 - 12747302
Alignment:
Q  165 aatatgaattgtatagttactcatatat--aaggaaggaaaccaggtaacagatttccttgcaaactttggtctatct 240  Q
    |||||| |||||||||| ||||| || |  |||||||||||||| ||| | |||| ||||||||||||||| ||||||    
T  12747225 aatatgcattgtatagtcactcacattttcaaggaaggaaaccaagtagctgattcccttgcaaactttgggctatct 12747302  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 256
Target Start/End: Original strand, 26206569 - 26206667
Alignment:
Q  160 ttagaaatatgaattgtatagttactca--tatataaggaaggaaaccaggtaacagatttccttgcaaactttggtctatctttaaaatcttatgttt 256  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||| |||||| |||||| |||||||||||||||| || | ||||| || |||||||    
T  26206569 ttagaaacatgaattgtatagttactcacatatataaggaaggaaatcaggtagcagattcccttgcaaactttggtttaaccttaaactcctatgttt 26206667  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 41341689 - 41341754
Alignment:
Q  314 tacctaattttaggttttcttcttcttgagggagttttggtttggtcccctccctcatttttgtac 379  Q
    ||||||||| || ||||||| |||||||||||||||||| ||||||||||||||||  ||||||||    
T  41341689 tacctaattataagttttctgcttcttgagggagttttgctttggtcccctccctctattttgtac 41341754  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 11527092 - 11527151
Alignment:
Q  316 cctaattttaggttttcttcttcttgagggagttttggtttggtcccctccctcatttttgta 378  Q
    |||||||||||||| ||||| ||   |||||||||||||||||||||||||||  ||||||||    
T  11527092 cctaattttaggttctcttcatc---agggagttttggtttggtcccctcccttctttttgta 11527151  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 369
Target Start/End: Original strand, 42877865 - 42877912
Alignment:
Q  322 tttaggttttcttcttcttgagggagttttggtttggtcccctccctc 369  Q
    |||||||||||||||   | ||||||||||||||||||||||||||||    
T  42877865 tttaggttttcttctcactaagggagttttggtttggtcccctccctc 42877912  T

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