View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_high_9 (Length: 469)
Name: NF8580_high_9
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 133 - 452
Target Start/End: Complemental strand, 32230940 - 32230621
Alignment:
| Q |
133 |
ttaaaactttgatgtcaaatattgtgccctttgatttttatgtgtattttctcaatgtttgttacttttagaaaatcaaaagtaagacataagtataaag |
232 |
Q |
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| T |
32230940 |
ttaaaactttgatgtcaaatattgtgccctttgatttttatgtgtatattctcaatgtttgttacttttagaaaatcaaaagtaagacacaagtataaag |
32230841 |
T |
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| Q |
233 |
acaaataaacatatgcggtatcacattccacgtatgtattttgatgttccactaacacaaactcaaggttatattttgattgatggaatgaagtagaata |
332 |
Q |
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| T |
32230840 |
ataaataaacatatgcggtatcacattccaagtatgtattttaatgttccaataacacaaactcaaggttatattttgattgatggaatgaagtagaata |
32230741 |
T |
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| Q |
333 |
agatagtgttatattgttttaatagtctttaaaagagtggaatagaaaggaattcaatggcatccattcaatcacatttattcacattttgcatcccctt |
432 |
Q |
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| T |
32230740 |
agatagtgttatattgttttaatagtctttaaaagagtgaaatagaaaggaattcgatggcatccattcaatcacatttattcacattttgcatcccctt |
32230641 |
T |
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| Q |
433 |
caatttgggaggaatggaac |
452 |
Q |
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| T |
32230640 |
caatttgggaggaatggaac |
32230621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 32231101 - 32230981
Alignment:
| Q |
7 |
ggtagattattctcaacaaattgagaccattttaagtgacattttataatttagatgatatatttaacaatttgcaaaatgaaatgctaatttaattggt |
106 |
Q |
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| T |
32231101 |
ggtatattattctcaacaaactgagaccattttaagtgacattttataatttagatgatatatttaacaatttgcaaaatgaaatgctaatttaattggt |
32231002 |
T |
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| Q |
107 |
gatcatactttctataatatg |
127 |
Q |
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| T |
32231001 |
gatcatactttctataatatg |
32230981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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