View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_low_12 (Length: 483)
Name: NF8580_low_12
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 41511606 - 41512065
Alignment:
| Q |
1 |
ccattgaagtggggagaggaagagaaactaggggtggttgtgaagaaggaagttattaaagaggcaatatgcaatgtgatgaatgaggaagttgaagaga |
100 |
Q |
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| T |
41511606 |
ccattgaattggggagaggaagagaaattaggggtggttgtgaagaaggaagttattaaagaggcaatatgcaatgtgatgaatgaggaagttgaagaga |
41511705 |
T |
|
| Q |
101 |
gtaaagagagaagagaaagggccaatgaacttagtgagattgcnnnnnnngctgttgaaaaaggtggatcttcttatcttaatatcactttgcttattca |
200 |
Q |
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| T |
41511706 |
gtaaagagagaagagaaagggctaatgaacttagtgagattgcaaaaaaagctgttgaaaaaggtggatcttcttatcttaatatcactttgcttattca |
41511805 |
T |
|
| Q |
201 |
agatatcatgcaacaacaatcaagcatcaaagttgaaacttgaagagatatgtaattttataacataatttgtcatgtgtttcttcttctttctatcatt |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41511806 |
agatatcatgcaacaacaatcaaacatcaaagttgaaacttgaagagatatgtaattttataacataatttgtcatgtttttcttcttctttctatcatt |
41511905 |
T |
|
| Q |
301 |
gcatattctatattgcaaagcatgaagttatatgcaacatgcatgaagaggtattgaatcaatataataattaatacttctatattataagaagagggta |
400 |
Q |
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| T |
41511906 |
gcatattctacattgcaaagcatgaagt--tatgcaacatgcatgaagaggtattgaatcaatataataattagtacttctatattataagaagagggta |
41512003 |
T |
|
| Q |
401 |
ctatatgttttcacttcattttgtttatatgttgaagattgtctaatgacaagctgtcattt |
462 |
Q |
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| T |
41512004 |
ctatatgttctcacttcattttgtttatatgttgaagattgtctaatgacaagctgtcattt |
41512065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 35 - 360
Target Start/End: Original strand, 41520680 - 41521005
Alignment:
| Q |
35 |
tggttgtgaagaaggaagttattaaagaggcaatatgcaatgtgatgaatgaggaagttgaagagagtaaagagagaagagaaagggccaatgaacttag |
134 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||| |
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| T |
41520680 |
tggttgtgaagaaggaaggtattaaagaggcaatatgcaatgtgatgaatgaggaagatcaagagagtaaagagagaagagaaagggctaatgaacttag |
41520779 |
T |
|
| Q |
135 |
tgagattgcnnnnnnngctgttgaaaaaggtggatcttcttatcttaatatcactttgcttattcaagatatcatgcaacaacaatcaagcatcaaagtt |
234 |
Q |
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| T |
41520780 |
tgagattgcaaaaaaagctgttgaaaaaggtggatcttcttatcttaatatcactttgcttattcaagatatcatgcaacaacaattaagcatcaaagtt |
41520879 |
T |
|
| Q |
235 |
gaaacttga--agagatatgtaattttataacataatttgtcatgtgtttcttcttctttctatcattgcatattctatattgcaaagcatgaagttata |
332 |
Q |
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||||||||| ||||||||||||||| |||||||||||||| | | |||||| | | | ||||||||||||||||| | ||||||||| ||||| || |
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| T |
41520880 |
gaaacttgaagagagatatgtaatttcataacataatttgtattttttttctttctttctatatcattgcatattctacactgcaaagcaggaagt--ta |
41520977 |
T |
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| Q |
333 |
tgcaacatgcatgaagaggtattgaatc |
360 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
41520978 |
tgcaacatgcatgaagaggtattgaatc |
41521005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 361 - 470
Target Start/End: Original strand, 41527921 - 41528030
Alignment:
| Q |
361 |
aatataataattaatacttctatattataagaagagggtactatatgttttcacttcattttgtttatatgttgaagattgtctaatgacaagctgtcat |
460 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41527921 |
aatataataattaatacttctatattataagaagagggtactatatgttttcacttcattttgtttatatgttgaagattgtctaatgacaagctgttac |
41528020 |
T |
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| Q |
461 |
ttgtttgttt |
470 |
Q |
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|||||||||| |
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| T |
41528021 |
ttgtttgttt |
41528030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 250
Target Start/End: Original strand, 48532987 - 48533194
Alignment:
| Q |
40 |
gtgaagaaggaagttattaaagaggcaatatgcaatgtgatgaatgaggaagttgaagagagtaaagagagaagagaaagggccaatgaacttagtgaga |
139 |
Q |
| |
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||||||||||||| |||||||||||||||||||| |||||| |||||| || |||| ||||||||||||||||||||||| | | |||| ||||||| |
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| T |
48532987 |
gtgaagaaggaaggtattaaagaggcaatatgcatggtgatggatgagggag---aagaaagtaaagagagaagagaaagggctagtaaactaagtgaga |
48533083 |
T |
|
| Q |
140 |
ttgcnnnnnnngctgttgaaaaaggtggatcttcttatcttaatatcactttgcttattcaagatatcatgcaacaacaatcaagcatcaaagttgaaac |
239 |
Q |
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| || |||||||||||||||||||| ||| |||||||||| | ||||||||| |||||||||||| ||||| |||||||| || |||||| || |
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| T |
48533084 |
tggcaaaaagagctgttgaaaaaggtggatcctctcatcttaatataaatttgcttatccaagatatcatggaacaatgatcaagcagcagagttgacac |
48533183 |
T |
|
| Q |
240 |
ttgaagagata |
250 |
Q |
| |
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||||| |||| |
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|
| T |
48533184 |
atgaagggata |
48533194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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