View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_low_14 (Length: 461)
Name: NF8580_low_14
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 48697506 - 48697110
Alignment:
| Q |
1 |
aacatgttccttttgatatgttgtcattggaagtagagggaaatgagaatgaacactcagaaaatccacaaaatttgtgcgacaataacttgttgtgagt |
100 |
Q |
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| T |
48697506 |
aacatgttccttttgatatgttgtcattggaagtagagggaaatgagaatgaactctcagaaaatccacaaaatttgtgcgacaataacttgttgtgagt |
48697407 |
T |
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| Q |
101 |
tctgttagctccaccggaagagactatatggcctaaattgggaggttggaattggaagaaaccttctgttgttgtatcatcagaagttgcatcattatgc |
200 |
Q |
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| T |
48697406 |
tctgtttgctccaccggaagagactatatggcctaaattgggaggttggaattggaagaaaccttctgttgttgtatcatcagaagttgcatcattatgc |
48697307 |
T |
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| Q |
201 |
tccatgtctgagaattcatctgagtaatcagaactatcgcaagcgatcgagaccttgtatggaagtatgaatgtgaaggtagaaccattttgttctttgc |
300 |
Q |
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| T |
48697306 |
tccatgtctgagaattcatctgagtaatcagaactatcgcaagcgatcgagaccttgtatggaagtatgaatgtgaaggtagaaccattttgttctttgc |
48697207 |
T |
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| Q |
301 |
tagacactgttaaacgacctcccatcaactcaacctatgccaagtgcaaataaaattcggcagtttagaaattgaatataacaaatgaaaagtgaca |
397 |
Q |
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| T |
48697206 |
tagacactgttaaacgacctcccatcaactcaacctatgccaagtgcaaataaaattcggcagtttagaaattgaatataacaaatgaaaagtgaca |
48697110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 442
Target Start/End: Complemental strand, 48708894 - 48708833
Alignment:
| Q |
380 |
aacaaatgaaaagtgacattcaccaaaagaaacaggtggatggaaaggaagtgagtgtttagt |
442 |
Q |
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| T |
48708894 |
aacaaatgaaatgtgacattcaacaaaagaaa-aggtggatggaaatgaaatttgtgtttagt |
48708833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 336
Target Start/End: Original strand, 3453587 - 3453671
Alignment:
| Q |
252 |
accttgtatggaagtatgaatgtgaaggtagaaccattttgttctttgctagacactgttaaacgacctcccatcaactcaacct |
336 |
Q |
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| T |
3453587 |
accttgtatggtagtatgaatgtgaaggtagaaccacaatgttctttgctagtcactgttagacgaccccccattaactcaacct |
3453671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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