View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_low_16 (Length: 421)
Name: NF8580_low_16
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_low_16 |
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| [»] scaffold0063 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2860676 - 2860456
Alignment:
| Q |
1 |
acgtaaatatcaaagaaaataaaacgacacttatctaaagaaaggttacatgaaatagttttaaattaaagatgatgatgacaaaaagatataagaaagt |
100 |
Q |
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| T |
2860676 |
acgtaaatatcaaagaaaataaaacgacacttatctaaagaaaggttacatgaaatagttttaaattaaagatgatgatgacaaaaagatataagaaagt |
2860577 |
T |
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| Q |
101 |
acataaagtggacatgtaagaaagaaaacgtaacaagtgaaggaaaggaaagggcaaaacatgggctaataagcgctggcaaatgtttggtggttgaatg |
200 |
Q |
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| T |
2860576 |
acataaagtggacatgtaagaaagaaaacgtaacaagtgaaggaaaggaaagggcaaaacatgggctaataagcgctggcaaatgtttggtggttgagtg |
2860477 |
T |
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| Q |
201 |
gagggtgcaacattaaatggt |
221 |
Q |
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| T |
2860476 |
gagggtgcaacattaaatggt |
2860456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 2860226 - 2860171
Alignment:
| Q |
225 |
atctgtttagaggttagttcttcttggttaaacttgagtccatgtatttatttgtc |
280 |
Q |
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| T |
2860226 |
atctgtttagaggttagttcttcttggttaaacttgagtcgatatatttctttgtc |
2860171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 49749 - 49963
Alignment:
| Q |
4 |
taaatatcaaagaaaataaaacgacacttatctaaagaaaggttacatgaaatagttttaaattaaagatgatgatgacaaaaagatataagaaagtaca |
103 |
Q |
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| T |
49749 |
taaatatcgaagaaaataaaactacacttatccagagaaaggctacattaaatagttttcaattaaagaaaatgac----aaaagaaataagaaagtaca |
49844 |
T |
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| Q |
104 |
ta--aagtggacatgtaagaaagaaaacgtaacaagtgaaggaaaggaaagggcaaaacatgggctaataagcgctggcaaatgtttggtggttgaatgg |
201 |
Q |
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|| |||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||| | ||| ||| ||||||| || |||| ||| |
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| T |
49845 |
tataaagtggacatgtaagaaataaaatgtaacaagtgaaggaaaggaaaggacaaaacatgggctaatcaacgcaggc-aatgttttgtagttggatgc |
49943 |
T |
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| Q |
202 |
agggtgcaacattaaatggt |
221 |
Q |
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| T |
49944 |
agagtgcaacattaaatggt |
49963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 36040428 - 36040213
Alignment:
| Q |
4 |
taaatatcaaagaaaataaaacgacacttatctaaagaaaggttacatgaaatagttttaaattaaagatgatgatgacaaaaagatataagaaagtac- |
102 |
Q |
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|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| ||| ||||||| |
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| T |
36040428 |
taaacatcaaagaaaataaaacgactcttatctaaaggaaggttacatgaaatagttttaaattaaagaaaatga----caaaaggcatagcaaagtaca |
36040333 |
T |
|
| Q |
103 |
--ataaagtggacatgtaagaaagaaaacgtaacaagtgaaggaaaggaaagggcaaaacatgggctaataagcgctggcaaatgtttggtggttgaatg |
200 |
Q |
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|||||| ||||| |||||||| |||| |||| ||||||| ||||||||||| |||||| | ||| ||| |||||| || ||||||||||||| ||| |
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| T |
36040332 |
taataaaggggacacgtaagaaataaaatgtaaaaagtgaatgaaaggaaaggccaaaacgtaggcaaatcagcgctagc-cgtgtttggtggttggatg |
36040234 |
T |
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| Q |
201 |
gagggtgcaacattaaatggt |
221 |
Q |
| |
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| T |
36040233 |
cacggtgcaacattaaatggt |
36040213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 43352934 - 43352875
Alignment:
| Q |
4 |
taaatatcaaagaaaataaaacgacacttatctaaagaaaggttacatgaaatagtttta |
63 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
43352934 |
taaatatcaaagaaaataaaacaacacttatctaaagaaaaattacatgaaatagtttta |
43352875 |
T |
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