View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_low_18 (Length: 374)
Name: NF8580_low_18
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 12621838 - 12621503
Alignment:
| Q |
19 |
aattgatcataacttttattgtccatctcccatgataaattatcatctgtattttccaccccaacaaactggttttcttgttccatatcaagacattctt |
118 |
Q |
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| T |
12621838 |
aattgatcataacttttattgtccatctcccatgataaattatcatctgtattttccaccccaacaaactggttttcttgttccatatcaagacattctt |
12621739 |
T |
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| Q |
119 |
ccaggttaataccttcaaggggtccctctccatgagaactgattatagacaaagtatcagtttcaggttcagaatcccatgacgacaaaggtgattgaca |
218 |
Q |
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| T |
12621738 |
ccaggttaataccttcaaggggtccctctccatgagaactgattatagacaaagtatcagtttcaggttcagaatcccatgacgacaaaggtgattgaca |
12621639 |
T |
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| Q |
219 |
accctcattcacagaaactacggaactattatcgtcaatactgagaggttgaaggctagacttcagcttcatatatggagtcacaaatacacactctcca |
318 |
Q |
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| T |
12621638 |
accctcattcacagaaactacggaactattatcgtcaatattgagaggttgaaggctagacttcagcttcatatatggagtcacaaatacacactctcca |
12621539 |
T |
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| Q |
319 |
tcacaacttaaatctgaattgatagaaccctccatc |
354 |
Q |
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| T |
12621538 |
tcacaacttaaatctgaattgatagaaccctccatc |
12621503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 12627680 - 12627630
Alignment:
| Q |
61 |
tcatctgtattttccaccccaacaaactggttttcttgttccatatcaaga |
111 |
Q |
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| T |
12627680 |
tcatctgtattttccactccaacaaactggttttcttgttccacatcaaga |
12627630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 12627578 - 12627510
Alignment:
| Q |
166 |
gacaaagtatcagtttcaggttcagaatcccatgacgacaaaggtgattgacaaccctcattcacagaa |
234 |
Q |
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| T |
12627578 |
gacaaaatatcagtttcagcttcggaatcccatgacgataattgtgattcataaccctctttcagagaa |
12627510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 42843060 - 42842981
Alignment:
| Q |
24 |
atcataacttttattgtccatctcccatgataaattatcatctgtattttccaccccaacaaactggttttcttgttccatat |
106 |
Q |
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| T |
42843060 |
atcataacttctattgtctatctcccacgataaat---catctgtgttttccaccccaacaaactgattttgttcttccatat |
42842981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 42842918 - 42842867
Alignment:
| Q |
172 |
gtatcagtttcaggttcagaatcccatgacgacaaaggtgattgacaaccct |
223 |
Q |
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| T |
42842918 |
gtatcattttcaggttcagaatcccatgatgataaaggtgattcagaaccct |
42842867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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