View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_low_19 (Length: 362)
Name: NF8580_low_19
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 11988623 - 11988309
Alignment:
| Q |
20 |
cagagtaaacgcaaagccacatctatagaaaagcagacatatgaaaagtcaattttctaccaagttttattaataaagaaactcactcatatgttgatcc |
119 |
Q |
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| T |
11988623 |
cagagtaaatgcaaagccacatctatagaaaaacagacatatgaaaagtcaattttctaccaagttttattaataaagaaactcactcatatgttgatcc |
11988524 |
T |
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| Q |
120 |
cctcatgctactgcaagagtaaaaaatgaaactaggagagaagttgaatttaagagagagatattggggagttaggattctctccatttacaaaaataaa |
219 |
Q |
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| T |
11988523 |
cctcatgctactgcaagagtaaaaaatgaaactaggagagaagttgaatttaagagagagatattggggagttaggattctctccatttacaaaaataaa |
11988424 |
T |
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| Q |
220 |
tgaagattttcatttaatgtggatctaccaataagtgagtttcatcattattaaattttattgtgtctgtattttattaaatgaaataaatggaggagat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11988423 |
tgaagattttcatttaatgtggatctaccaataagtgagtttcatcattattaaattttattgtgtctgtattttattaaatgaaataaatggaggagat |
11988324 |
T |
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| Q |
320 |
ttaaaatagagggga |
334 |
Q |
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| T |
11988323 |
ttaaaatagagggga |
11988309 |
T |
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