View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_low_2 (Length: 700)
Name: NF8580_low_2
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 19 - 657
Target Start/End: Complemental strand, 10739667 - 10739041
Alignment:
| Q |
19 |
ggtatacactaagctattgtaagttccatcttataagataataacaaacttcataacaaactagaaagttagttataactgtttttgttcactaaaacta |
118 |
Q |
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| T |
10739667 |
ggtatacactaagctattgtaagttccatcttataagataacaacaaacttcataacaaactagaaagttagttataactgtttttgtttactaaaacta |
10739568 |
T |
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| Q |
119 |
attggagcttgtgatagcttgtgttgcaagtaactgaggtgcactatgttcttctt---tatctagtagcaagcttgattccaagtcttttgtgttatgc |
215 |
Q |
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| T |
10739567 |
attggagcttgtg----------ttgcaagtaactgaggttcactatgttcttcttctttatctagtagcaagcttgattccaagtcttttgtgttatgc |
10739478 |
T |
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| Q |
216 |
tttaatactcattgttagaaaacatcctctttatttcttgatggacacataacccttgctcgattctccctcactagtattccacagtacatttagaaaa |
315 |
Q |
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| T |
10739477 |
ttcaatactcattgttagaaaacatcctctttatttcttgatggacacataacccttgctcgattctccctcactagtatttcacagtacatttagaaaa |
10739378 |
T |
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| Q |
316 |
ttgtttgtatcccattttccatctgttatgatgttgagaaaattgttgggattttattttttggaagtatcagtgacaattacaaatgtcacaaatgcca |
415 |
Q |
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| T |
10739377 |
ttgtttgtatcccattttccatctgttatgatgttgagaaaattgttgggattttat-ttttggaagtatcagtgacaatcacaaatgtcacaaatgcca |
10739279 |
T |
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| Q |
416 |
tccctcagttactaaaatatctctatactagctatcttctttagcctatgcctccatgattagttacattggaatctctctttaaatgacacaatgtttc |
515 |
Q |
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| T |
10739278 |
tccctcagttactaaaatatctctatacttgctatcttctttagcctatgcctccatgattagttacattggaatctctctttaaatgacacaatgtttc |
10739179 |
T |
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| Q |
516 |
tatagctggctagataaattgttttcttcgttgttatagtttggaatttgtgaaacgatagatataaacaatcttattttttagggtaacactattattg |
615 |
Q |
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| T |
10739178 |
tgtaactggctagataaattgttttctttgttgttatagtttggaatttgtgaaac----gatataaacaatcttattttttagggtaacactattattg |
10739083 |
T |
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| Q |
616 |
atagcaatcttcttgaatcctccaatcatatggttcatctta |
657 |
Q |
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| T |
10739082 |
atagcaatcttcttgaatcctccaatcatatggttcatctta |
10739041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 581 - 672
Target Start/End: Complemental strand, 36276118 - 36276029
Alignment:
| Q |
581 |
aaacaatcttattttttagggtaacactattattgatagcaatcttcttgaatcctccaatcatatggttcatcttattatgcaagacacaa |
672 |
Q |
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| T |
36276118 |
aaacaatcttattttttagggtaaaactattatcgataggtat--tcttgaatcctccaatattatggtccatcttattatgcaagacacaa |
36276029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 585 - 657
Target Start/End: Original strand, 38002615 - 38002687
Alignment:
| Q |
585 |
aatcttattttttagggtaacactattattgatagcaatcttcttgaatcctccaatcatatggttcatctta |
657 |
Q |
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| T |
38002615 |
aatcttatttttttagctaaaactatttttgatagaggtcgttttgaatcctccaataatatggttcatctta |
38002687 |
T |
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