View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_low_20 (Length: 360)
Name: NF8580_low_20
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 34774393 - 34774604
Alignment:
| Q |
18 |
tgaagcaaagttggtgaagtatttggctggtgattttttcagccttgctgatatgagtcaccttccatttatggattacgttgttaacaatacggggaag |
117 |
Q |
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| T |
34774393 |
tgaagcaaagttggtgaagtatttggctggtgattttttcagccttgctgatatgagtcaccttccatttatggattacgttgttaacaatatgaggaag |
34774492 |
T |
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| Q |
118 |
gattgtttgataaaggataggaagcatgttagtgcatggtggaatgatatatgtgacatgcggtcgtggaactgatgttgcgttttgttttagccgttgt |
217 |
Q |
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| T |
34774493 |
gattgtttgataaaggataggaagcatgttagtgcatggtggaatgatatatgtgacacgcggtggtggaactgatgttgcgttttgttttagccgttgt |
34774592 |
T |
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| Q |
218 |
ttcggttaaagt |
229 |
Q |
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| T |
34774593 |
ttcggttaaagt |
34774604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 302 - 349
Target Start/End: Original strand, 34774677 - 34774724
Alignment:
| Q |
302 |
ccgataggtgtggtctgtttccggtggcttcaggtgtggcggcatctc |
349 |
Q |
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| T |
34774677 |
ccgataggtgtggtctgtttccggtggcttcaggtgtggcgacatctc |
34774724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 39601309 - 39601443
Alignment:
| Q |
34 |
aagtatttggctggtgattttttcagccttgctgatatgagtcaccttccatttatggattacgttgttaacaatacggggaaggattgtttgataaagg |
133 |
Q |
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| T |
39601309 |
aagtatttggctggtgattttttcagccttgctgatataagtcaccttccatttatggattacgttgttaacaatatggggaaagattatttgataaagg |
39601408 |
T |
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| Q |
134 |
ataggaagcatgttagtgcatggtggaatgatata |
168 |
Q |
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| T |
39601409 |
ataagaagcatgttagtgcttggtggaatgatata |
39601443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 39612130 - 39612264
Alignment:
| Q |
34 |
aagtatttggctggtgattttttcagccttgctgatatgagtcaccttccatttatggattacgttgttaacaatacggggaaggattgtttgataaagg |
133 |
Q |
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| T |
39612130 |
aagtatttggctggtgattttttcagccttgctgatataagtcaccttccatttactgattatattgttaacaatatggggaaagattatttgattaagg |
39612229 |
T |
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| Q |
134 |
ataggaagcatgttagtgcatggtggaatgatata |
168 |
Q |
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| T |
39612230 |
agaggaaaaatgttagtgcttggtgggatgatata |
39612264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 13955037 - 13954991
Alignment:
| Q |
303 |
cgataggtgtggtctgtttccggtggcttcaggtgtggcggcatctc |
349 |
Q |
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| T |
13955037 |
cgataggtgttatctgtttccggtggctacaggtgtggcggcatctc |
13954991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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