View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_low_23 (Length: 340)
Name: NF8580_low_23
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_low_23 |
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| [»] scaffold1750 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 22 - 323
Target Start/End: Complemental strand, 35678572 - 35678271
Alignment:
| Q |
22 |
caagtagagggtattttctacggcaagtaaggccattagtttcagacatgtccagatccttcccttctactccatcaggcaatttccaatcaaattggta |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
35678572 |
caagtagagggtattttctacggcaagtaaggccattagtttcagacatgtccagatccttcccttctacaccatcaggcaatttccaatcaaattgatg |
35678473 |
T |
|
| Q |
122 |
aacaaggttcgctaaaaccaattcattgatagaaatagcaaacaacactccaggacaacctctccttcctgctccaaatgggataagttcaaaatccaat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35678472 |
aacaaggttcgctaaaaccaattcattgatagaaatagcaaacaacactccaggacaacctctccttcctgctccaaatgggataagttcaaaatccaat |
35678373 |
T |
|
| Q |
222 |
cctttataatctattgaactattcataaacctttctggtttaaactctagaggttgttcccaaattgaagagtctcttgcaattgcccaagcattgacta |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35678372 |
cctttataatctattgaactattcataaacctttctggtttaaactctagaggttcttcccaaattgaagagtctcttgcaattgcccaagcattgacta |
35678273 |
T |
|
| Q |
322 |
tt |
323 |
Q |
| |
|
|| |
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|
| T |
35678272 |
tt |
35678271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 323
Target Start/End: Complemental strand, 35657172 - 35656871
Alignment:
| Q |
22 |
caagtagagggtattttctacggcaagtaaggccattagtttcagacatgtccagatccttcccttctactccatcaggcaatttccaatcaaattggta |
121 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35657172 |
caaggagagggtattttctatggcaagtaaggccattagtttcagacatgtccaaatccttcccttctactccatcaggcaatttccaatcaaattggta |
35657073 |
T |
|
| Q |
122 |
aacaaggttcgctaaaaccaattcattgatagaaatagcaaacaacactccaggacaacctctccttcctgctccaaatgggataagttcaaaatccaat |
221 |
Q |
| |
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||||||||| |||| ||||||||||| | | ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35657072 |
aacaaggtttgctagcaccaattcattcactgcaattccaaacaacacaccaggacaacccctccttcctgctccaaatgggataagttcaaaatccaat |
35656973 |
T |
|
| Q |
222 |
cctttataatctattgaactattcataaacctttctggtttaaactctagaggttgttcccaaattgaagagtctcttgcaattgcccaagcattgacta |
321 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| | ||| |||||||||||||||| |
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| T |
35656972 |
cctttataatctattgaactattcataaacctttctggtttaaactctagaggttcttcccaacttgaagggtctctagaaatagcccaagcattgacta |
35656873 |
T |
|
| Q |
322 |
tt |
323 |
Q |
| |
|
|| |
|
|
| T |
35656872 |
tt |
35656871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 59 - 323
Target Start/End: Complemental strand, 35650455 - 35650191
Alignment:
| Q |
59 |
agtttcagacatgtccagatccttcccttctactccatcaggcaatttccaatcaaattggtaaacaaggttcgctaaaaccaattcattgatagaaata |
158 |
Q |
| |
|
||||||||||||||||| ||| ||| || | |||||||||||||||||||||||||| |||| ||||||||| |||| ||||||||||||| || |||| |
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| T |
35650455 |
agtttcagacatgtccaaatctttcactgcaactccatcaggcaatttccaatcaaaatggtgaacaaggtttgctagcaccaattcattgacagcaata |
35650356 |
T |
|
| Q |
159 |
gcaaacaacactccaggacaacctctccttcctgctccaaatgggataagttcaaaatccaatcctttataatctattgaactattcataaacctttctg |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35650355 |
gcaaacaacactccaggacaacctctccttcctgctccaaatggaataagttcaaaatccaatcctttataatctattgaactgttcataaacctttctg |
35650256 |
T |
|
| Q |
259 |
gtttaaactctagaggttgttcccaaattgaagagtctcttgcaattgcccaagcattgactatt |
323 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
35650255 |
gtttaaactctagaggttgatcccaacttgaaggatctcttgcaattgcccaagcattgactatt |
35650191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 62 - 318
Target Start/End: Complemental strand, 35642875 - 35642619
Alignment:
| Q |
62 |
ttcagacatgtccagatccttcccttctactccatcaggcaatttccaatcaaattggtaaacaaggttcgctaaaaccaattcattgatagaaatagca |
161 |
Q |
| |
|
|||||||||||||| ||| ||| || | | |||||||||||||||||||||||| |||| ||||||||| |||| ||||||||||||| || ||||||| |
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| T |
35642875 |
ttcagacatgtccaaatctttctctgcaattccatcaggcaatttccaatcaaaatggtgaacaaggtttgctagcaccaattcattgacagcaatagca |
35642776 |
T |
|
| Q |
162 |
aacaacactccaggacaacctctccttcctgctccaaatgggataagttcaaaatccaatcctttataatctattgaactattcataaacctttctggtt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| |||||||||||||| |
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| T |
35642775 |
aacaacactccaggacaacctctccttcctgctccaaatgggataagttcaaaatcaaatcctttgaaatctattgaactgttcagaaacctttctggtt |
35642676 |
T |
|
| Q |
262 |
taaactctagaggttgttcccaaattgaagagtctcttgcaattgcccaagcattga |
318 |
Q |
| |
|
||||||||| ||| ||||||||| |||||| |||||||||||| ||||||||||||| |
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| T |
35642675 |
taaactctaaaggatgttcccaacttgaagggtctcttgcaatagcccaagcattga |
35642619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1750 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: scaffold1750
Description:
Target: scaffold1750; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 92 - 323
Target Start/End: Complemental strand, 1408 - 1177
Alignment:
| Q |
92 |
tccatcaggcaatttccaatcaaattggtaaacaaggttcgctaaaaccaattcattgatagaaatagcaaacaacactccaggacaacctctccttcct |
191 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||| |||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
1408 |
tccatcaggcaatttccaatcaaaatggtgaacaaggtttgctagcaccaattcattgacagcaatagcaaacaacactccaggacaacctctccttcct |
1309 |
T |
|
| Q |
192 |
gctccaaatgggataagttcaaaatccaatcctttataatctattgaactattcataaacctttctggtttaaactctagaggttgttcccaaattgaag |
291 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
1308 |
gctccaaatggaataagttcaaaatccaatcctttataatctattgaactgttcataaacctttctggtttaaactctagaggttgatcccaacttgaag |
1209 |
T |
|
| Q |
292 |
agtctcttgcaattgcccaagcattgactatt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
1208 |
gatctcttgcaattgcccaagcattgactatt |
1177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 322
Target Start/End: Original strand, 23024380 - 23024408
Alignment:
| Q |
294 |
tctcttgcaattgcccaagcattgactat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
23024380 |
tctcttgcaattgcccaagcattgactat |
23024408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 322
Target Start/End: Original strand, 23032807 - 23032835
Alignment:
| Q |
294 |
tctcttgcaattgcccaagcattgactat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
23032807 |
tctcttgcaattgcccaagcattgactat |
23032835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 322
Target Start/End: Original strand, 23039149 - 23039177
Alignment:
| Q |
294 |
tctcttgcaattgcccaagcattgactat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
23039149 |
tctcttgcaattgcccaagcattgactat |
23039177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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