View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8580_low_42 (Length: 263)

Name: NF8580_low_42
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8580_low_42
NF8580_low_42
[»] chr7 (13 HSPs)
chr7 (30-263)||(22200000-22200229)
chr7 (30-263)||(22237592-22237821)
chr7 (42-149)||(30703694-30703802)
chr7 (30-131)||(35035611-35035712)
chr7 (30-151)||(30413648-30413769)
chr7 (42-131)||(41616204-41616293)
chr7 (42-123)||(23701840-23701921)
chr7 (30-128)||(5546881-5546980)
chr7 (1-33)||(27814056-27814088)
chr7 (1-33)||(40349206-40349238)
chr7 (36-156)||(33999570-33999691)
chr7 (1-33)||(25614353-25614385)
chr7 (1-33)||(36453124-36453156)
[»] chr3 (18 HSPs)
chr3 (30-151)||(46798973-46799094)
chr3 (30-131)||(50121081-50121181)
chr3 (30-123)||(22926375-22926467)
chr3 (51-131)||(52796231-52796311)
chr3 (18-123)||(42791522-42791627)
chr3 (42-131)||(7754889-7754979)
chr3 (30-111)||(42684316-42684397)
chr3 (46-123)||(49033644-49033720)
chr3 (1-33)||(13365088-13365120)
chr3 (1-33)||(19241668-19241700)
chr3 (1-33)||(29375377-29375409)
chr3 (1-33)||(36881525-36881557)
chr3 (1-33)||(46694110-46694142)
chr3 (3-34)||(32834988-32835019)
chr3 (36-82)||(37653111-37653157)
chr3 (1-38)||(48820585-48820622)
chr3 (1-33)||(18355868-18355900)
chr3 (1-33)||(37293437-37293469)
[»] chr2 (16 HSPs)
chr2 (30-131)||(31807769-31807870)
chr2 (30-129)||(42435471-42435570)
chr2 (30-129)||(33078097-33078196)
chr2 (30-128)||(36613314-36613412)
chr2 (30-128)||(36621165-36621263)
chr2 (32-131)||(5443510-5443605)
chr2 (1-35)||(12969738-12969772)
chr2 (1-33)||(22388138-22388170)
chr2 (1-33)||(23367034-23367066)
chr2 (1-33)||(40756911-40756943)
chr2 (2-33)||(1102747-1102778)
chr2 (1-36)||(37673740-37673775)
chr2 (1-33)||(1646532-1646564)
chr2 (1-33)||(3519152-3519184)
chr2 (7-39)||(35996403-35996435)
chr2 (1-33)||(39938415-39938447)
[»] chr1 (13 HSPs)
chr1 (30-127)||(35159715-35159812)
chr1 (32-91)||(34502885-34502944)
chr1 (32-129)||(52435380-52435477)
chr1 (1-34)||(321871-321904)
chr1 (1-33)||(284578-284610)
chr1 (1-33)||(23045279-23045311)
chr1 (1-33)||(23526484-23526516)
chr1 (1-33)||(24771906-24771938)
chr1 (1-33)||(33082989-33083021)
chr1 (1-33)||(40783657-40783689)
chr1 (42-128)||(46593775-46593862)
chr1 (1-35)||(51065001-51065035)
chr1 (1-33)||(47037852-47037884)
[»] chr8 (19 HSPs)
chr8 (32-157)||(13068198-13068321)
chr8 (30-123)||(12506776-12506869)
chr8 (58-128)||(31452222-31452292)
chr8 (31-128)||(42027508-42027605)
chr8 (30-119)||(38939324-38939415)
chr8 (42-123)||(45394113-45394196)
chr8 (1-35)||(40918729-40918763)
chr8 (30-123)||(31969568-31969660)
chr8 (1-33)||(7147158-7147190)
chr8 (1-33)||(11646325-11646357)
chr8 (1-33)||(30999524-30999556)
chr8 (1-33)||(36068325-36068357)
chr8 (1-33)||(40058303-40058335)
chr8 (1-33)||(43275399-43275431)
chr8 (37-151)||(11708820-11708932)
chr8 (1-39)||(36068074-36068112)
chr8 (1-34)||(37345816-37345849)
chr8 (1-33)||(2539930-2539962)
chr8 (1-33)||(11174223-11174255)
[»] chr4 (18 HSPs)
chr4 (42-130)||(21622643-21622731)
chr4 (36-123)||(28115647-28115735)
chr4 (30-131)||(44655045-44655144)
chr4 (46-154)||(45096780-45096888)
chr4 (1-36)||(12071805-12071840)
chr4 (32-122)||(38616895-38616985)
chr4 (1-33)||(14261289-14261321)
chr4 (1-33)||(21310666-21310698)
chr4 (1-33)||(24706247-24706279)
chr4 (1-33)||(25704896-25704928)
chr4 (1-33)||(44569082-44569114)
chr4 (1-31)||(21661537-21661567)
chr4 (1-31)||(21670301-21670331)
chr4 (1-39)||(40122481-40122519)
chr4 (36-81)||(39402997-39403042)
chr4 (1-33)||(20249014-20249046)
chr4 (1-33)||(22321268-22321300)
chr4 (1-33)||(39295421-39295453)
[»] chr6 (15 HSPs)
chr6 (42-133)||(4601355-4601446)
chr6 (37-131)||(7246531-7246625)
chr6 (58-133)||(33755629-33755704)
chr6 (30-123)||(3435734-3435827)
chr6 (1-35)||(4129671-4129705)
chr6 (1-33)||(1605823-1605855)
chr6 (1-33)||(7761545-7761577)
chr6 (1-33)||(8626727-8626759)
chr6 (1-33)||(15064695-15064727)
chr6 (1-33)||(17942688-17942720)
chr6 (1-33)||(29260437-29260469)
chr6 (36-123)||(20621748-20621834)
chr6 (46-123)||(5583620-5583697)
chr6 (1-33)||(13757452-13757484)
chr6 (1-33)||(31559738-31559770)
[»] chr5 (11 HSPs)
chr5 (37-131)||(20869362-20869456)
chr5 (32-123)||(36784224-36784315)
chr5 (1-33)||(12806853-12806885)
chr5 (1-33)||(25683229-25683261)
chr5 (1-33)||(30720492-30720524)
chr5 (1-33)||(36561099-36561131)
chr5 (1-33)||(40886610-40886642)
chr5 (88-131)||(3425747-3425790)
chr5 (1-33)||(10285058-10285090)
chr5 (1-33)||(23097724-23097756)
chr5 (1-33)||(25773894-25773926)
[»] scaffold1770 (1 HSPs)
scaffold1770 (1-35)||(406-440)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-35)||(45698-45732)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 30 - 263
Target Start/End: Complemental strand, 22200229 - 22200000
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 129  Q
    ||||||||||||||||||||||||||||||||| ||||||||   |||||| |||||||||| |||| |||||||||||||||||||||||||| |||||    
T  22200229 agtaatttttgtattgaaagatgtgtaatcaatacattaaaaatctaaaaagtgtctattttaacttacaatttcttcttttggcttccttaaccagtgc 22200130  T
Q  130 cc-ggagtcaccggttaacatgatcctaaatgaaattatgtaaggaaatatataaattgcaacaatttattactatgatgtaaattgaaatatgacatgt 228  Q
    || |||| ||| |||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22200129 cccggaggcacaggttaac-----cctaaatgaaattatgtaaggaaatatataaattgcaacaatttattactatgatgtaaattgaaatatgacatgt 22200035  T
Q  229 tattttgacataataattatgttctgatccaatct 263  Q
    |||||||||||||||||||||||||||||||||||    
T  22200034 tattttgacataataattatgttctgatccaatct 22200000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 30 - 263
Target Start/End: Original strand, 22237592 - 22237821
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 129  Q
    ||||||||||||||||||||||||||||||||| ||||||||   |||||| |||||||||| |||| |||||||||||||||||||||||||| |||||    
T  22237592 agtaatttttgtattgaaagatgtgtaatcaatacattaaaaatctaaaaagtgtctattttaacttacaatttcttcttttggcttccttaaccagtgc 22237691  T
Q  130 cc-ggagtcaccggttaacatgatcctaaatgaaattatgtaaggaaatatataaattgcaacaatttattactatgatgtaaattgaaatatgacatgt 228  Q
    || |||| ||| |||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22237692 cccggaggcacaggttaac-----cctaaatgaaattatgtaaggaaatatataaattgcaacaatttattactatgatgtaaattgaaatatgacatgt 22237786  T
Q  229 tattttgacataataattatgttctgatccaatct 263  Q
    |||||||||||||||||||||||||||||||||||    
T  22237787 tattttgacataataattatgttctgatccaatct 22237821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 30703802 - 30703694
Alignment:
Q  42 attgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtg-cccggagtcacc 140  Q
    |||||||| |||||||||||||||||||||| |||| || ||||| |||| |||| || ||||||||||||||||||||||| |||| ||||| | ||||    
T  30703802 attgaaagttgtgtaatcaatgcattaaaagattaacaagtgtctttttttactttcactttcttcttttggcttccttaaccagtgccccgggggcacc 30703703  T
Q  141 ggttaacat 149  Q
    |||||||||    
T  30703702 ggttaacat 30703694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 35035712 - 35035611
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 129  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||| | | | |||| |||| |||||||| | ||||||||| ||||| |||||    
T  35035712 agtaatttttgtattgaaagttgtgtattcaatgcattaaaagcttaaaaagtatatttttttacttacaatttctccctttggcttctttaaccagtgc 35035613  T
Q  130 cc 131  Q
    ||    
T  35035612 cc 35035611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 30413648 - 30413769
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 129  Q
    ||||||||||  ||| |||| | | |||||||| ||||||||  ||||||| ||||| ||||||||| |||||| |||||||| ||||||||||||||||    
T  30413648 agtaattttttcattaaaagttatttaatcaattcattaaaaatttaaaaagtgtcttttttgacttacaattttttcttttgacttccttaactagtgc 30413747  T
Q  130 ccggagtcaccggttaacatga 151  Q
    ||   | ||| |||||||||||    
T  30413748 cccaggacactggttaacatga 30413769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 41616204 - 41616293
Alignment:
Q  42 attgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgccc 131  Q
    ||||||||||||||||| ||||||||||||  |||| || ||||| ||||||||| || |||||||||||| | |||||||| |||||||    
T  41616204 attgaaagatgtgtaattaatgcattaaaaaattaataagtgtcttttttgactttcactttcttcttttgccctccttaaccagtgccc 41616293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 23701840 - 23701921
Alignment:
Q  42 attgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 123  Q
    |||||||| | |||| |||||||||||||| |||||||| ||||  |||| ||||| |||||| |||||| |||||||||||    
T  23701840 attgaaagctatgtagtcaatgcattaaaaacttaaaaagtgtcattttttacttcaaatttcctcttttagcttccttaac 23701921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 5546980 - 5546881
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgact-tccaatttcttcttttggcttccttaactagtg 128  Q
    ||||||||||| |||||||  ||| |||||||||||||||||||||||||| ||| | |||| |||  | ||||| || |||||| ||||||||| ||||    
T  5546980 agtaatttttgcattgaaaattgtataatcaatgcattaaaagcttaaaaactgtattttttaactagcaaatttttttttttggattccttaaccagtg 5546881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27814056 - 27814088
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  27814056 aaaatggacaagtattatgaaacggagggagta 27814088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 40349206 - 40349238
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  40349206 aaaatggacaagtattatgaaacggagggagta 40349238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 33999691 - 33999570
Alignment:
Q  36 ttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtg-cccgga 134  Q
    |||||||||||||| ||||   ||| ||| |||||||||||||||||||   || ||||||  ||||||| ||||| | ||||||||| |||| |||| |    
T  33999691 ttttgtattgaaagttgtgctgtcattgcgttaaaagcttaaaaaatgttctttgtgacttaaaatttctacttttagtttccttaaccagtgtcccgaa 33999592  T
Q  135 gtcaccggttaacatgatccta 156  Q
    | ||| ||||||| ||| ||||    
T  33999591 ggcactggttaacgtgaaccta 33999570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 25614385 - 25614353
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    ||||||||||| |||||||||||||||||||||    
T  25614385 aaaatggacaattattatgaaacggagggagta 25614353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36453156 - 36453124
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    ||||||||||||||||||||||||||| |||||    
T  36453156 aaaatggacaagtattatgaaacggagagagta 36453124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 46799094 - 46798973
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 129  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||| | |  |||||||||||||||||||||||||| |||||    
T  46799094 agtaatttttgcattaaaagatgtgtaatcaatgcattaaaagcttaaaaagtgtctttttttattaacaatttcttcttttggcttccttaaccagtgc 46798995  T
Q  130 ccggagtcaccggttaacatga 151  Q
    || | | ||| |||||||||||    
T  46798994 ccagggacactggttaacatga 46798973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 50121081 - 50121181
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 129  Q
    |||||| |||| ||| |||| |||||||| |||| |||| ||||||||||||||||| |||||| || |||||||||||||| |||||||||||||||||    
T  50121081 agtaatatttgcattaaaagttgtgtaattaatgaattacaagcttaaaaaatgtctcttttgatttacaatttcttctttt-gcttccttaactagtgc 50121179  T
Q  130 cc 131  Q
    ||    
T  50121180 cc 50121181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 22926467 - 22926375
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 123  Q
    |||||| |||| |||||||| |||||||||||||||||||||| ||||||| ||||| || |||||| | |||||||| |||||||||||||||    
T  22926467 agtaatatttgcattgaaagttgtgtaatcaatgcattaaaagtttaaaaagtgtcttttctgacttac-atttcttcatttggcttccttaac 22926375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 52796311 - 52796231
Alignment:
Q  51 tgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgccc 131  Q
    |||||||||||||||||||||| ||||||| ||||| |||||| ||  ||||||||||||||| ||||||||| |||||||    
T  52796311 tgtgtaatcaatgcattaaaagattaaaaagtgtctcttttgatttttaatttcttcttttggattccttaaccagtgccc 52796231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 42791522 - 42791627
Alignment:
Q  18 tgaaacggagggagtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttc 117  Q
    ||||||||| |||||||| |||  ||||| || ||| |||||||| |||||||| || ||||| ||||| |||| |||| |||||| ||||||| |||||    
T  42791522 tgaaacggatggagtaatattttcattgatagttgtataatcaatacattaaaaactcaaaaagtgtcttttttaacttacaattttttcttttagcttc 42791621  T
Q  118 cttaac 123  Q
    ||||||    
T  42791622 cttaac 42791627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 7754889 - 7754979
Alignment:
Q  42 attgaaagatgtgtaatcaatgcattaaaagcttaaaaaa-tgtctattttgacttccaatttcttcttttggcttccttaactagtgccc 131  Q
    ||||||||  |||||||||||| |||||||| |||||||  | ||| |||||| ||  |||||||| ||||||||||||||||||||||||    
T  7754889 attgaaagcagtgtaatcaatgaattaaaagtttaaaaatgtatcttttttgatttgtaatttcttgttttggcttccttaactagtgccc 7754979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 42684316 - 42684397
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttctttt 111  Q
    |||||||||| ||||| ||| |||||||| |||| ||||||||||| |||||| ||| |||  |||| ||||||||||||||    
T  42684316 agtaatttttatattgtaagttgtgtaattaatgtattaaaagctttaaaaatatctttttcaacttacaatttcttctttt 42684397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 49033720 - 49033644
Alignment:
Q  46 aaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 123  Q
    |||| |||||||| ||||||||||||  ||||||| ||| | ||||||||| |||||||||  |||||||||||||||    
T  49033720 aaagttgtgtaataaatgcattaaaaatttaaaaagtgttt-ttttgacttacaatttctttatttggcttccttaac 49033644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13365088 - 13365120
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  13365088 aaaatggacaagtattatgaaacggagggagta 13365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19241700 - 19241668
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  19241700 aaaatggacaagtattatgaaacggagggagta 19241668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29375377 - 29375409
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  29375377 aaaatggacaagtattatgaaacggagggagta 29375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36881525 - 36881557
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  36881525 aaaatggacaagtattatgaaacggagggagta 36881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 46694142 - 46694110
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  46694142 aaaatggacaagtattatgaaacggagggagta 46694110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 32835019 - 32834988
Alignment:
Q  3 aatggacaagtattatgaaacggagggagtaa 34  Q
    ||||||||||||||||||||||||||||||||    
T  32835019 aatggacaagtattatgaaacggagggagtaa 32834988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 37653111 - 37653157
Alignment:
Q  36 ttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaat 82  Q
    |||||||||||||| |||||| | |||| ||||||||||||||||||    
T  37653111 ttttgtattgaaagttgtgtagttaatgtattaaaagcttaaaaaat 37653157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48820585 - 48820622
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagtaatttt 38  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  48820585 aaaatggacaagtattatgaaacggaggaagtattttt 48820622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 18355900 - 18355868
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||| ||||||||||||||||    
T  18355900 aaaatggacaagtattgtgaaacggagggagta 18355868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37293469 - 37293437
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||| ||||||||||||||||    
T  37293469 aaaatggacaagtattgtgaaacggagggagta 37293437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 31807870 - 31807769
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 129  Q
    |||||| ||| | ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  31807870 agtaatatttatgttgaaagttgtgtaatcaatgcattaaaagcttaaaaagtgtcttttttgacttacaatttcttcttttggcttccttaaccagtgc 31807771  T
Q  130 cc 131  Q
    ||    
T  31807770 cc 31807769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 42435570 - 42435471
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 129  Q
    ||||||||||||| ||||||||||||||||||||||||||||   |||||| ||||| |||||| || |||||||||||||||||||||||||| |||||    
T  42435570 agtaatttttgtactgaaagatgtgtaatcaatgcattaaaaatctaaaaattgtcttttttgatttgcaatttcttcttttggcttccttaaccagtgc 42435471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 33078097 - 33078196
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 129  Q
    |||||| |||| |||||||| || ||||||||||||||||||| ||||||| | ||| ||||||||| || ||||||||||||||||||||||| |||||    
T  33078097 agtaatatttgcattgaaagctgagtaatcaatgcattaaaagattaaaaagtatcttttttgactttcactttcttcttttggcttccttaaccagtgc 33078196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 36613314 - 36613412
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtg 128  Q
    |||||| |||| || ||||| ||||||||||||||||| ||| |||||||| ||||| |||| | || ||||||| |||||||||||||||||| ||||    
T  36613314 agtaatatttgcatggaaagttgtgtaatcaatgcattcaaaacttaaaaagtgtcttttttaatttacaatttcctcttttggcttccttaaccagtg 36613412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 36621165 - 36621263
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtg 128  Q
    |||||| |||| || ||||| ||||||||||||||||| ||| |||||||| ||||| |||| | || ||||||| |||||||||||||||||| ||||    
T  36621165 agtaatatttgcatggaaagttgtgtaatcaatgcattcaaaacttaaaaagtgtcttttttaatttacaatttcctcttttggcttccttaaccagtg 36621263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 5443605 - 5443510
Alignment:
Q  32 taatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgccc 131  Q
    |||| |||||||||| || ||||||||||||    ||||| |||||||| | |||||||||| ||  ||||||||||||| || |||||||| |||||||    
T  5443605 taatatttgtattgatagttgtgtaatcaat----taaaaacttaaaaagtatctattttgatttagaatttcttcttttagcatccttaaccagtgccc 5443510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12969772 - 12969738
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagtaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  12969772 aaaatggacaagtattatgaaacggagggagtaat 12969738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22388170 - 22388138
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  22388170 aaaatggacaagtattatgaaacggagggagta 22388138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 23367034 - 23367066
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  23367034 aaaatggacaagtattatgaaacggagggagta 23367066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40756943 - 40756911
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  40756943 aaaatggacaagtattatgaaacggagggagta 40756911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 1102747 - 1102778
Alignment:
Q  2 aaatggacaagtattatgaaacggagggagta 33  Q
    ||||||||||||||||||||||||||||||||    
T  1102747 aaatggacaagtattatgaaacggagggagta 1102778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 37673775 - 37673740
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagtaatt 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  37673775 aaaatggacaagtattatgaaacggaaggagtaatt 37673740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1646532 - 1646564
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||| ||||||||||||||||||||||    
T  1646532 aaaatggacaggtattatgaaacggagggagta 1646564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3519152 - 3519184
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  3519152 aaaatggacaagtattatgaaacggaggaagta 3519184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 35996403 - 35996435
Alignment:
Q  7 gacaagtattatgaaacggagggagtaattttt 39  Q
    ||||| |||||||||||||||||||||||||||    
T  35996403 gacaaatattatgaaacggagggagtaattttt 35996435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39938415 - 39938447
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  39938415 aaaatggacaagtattataaaacggagggagta 39938447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 35159715 - 35159812
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagt 127  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||| | ||| |||||| || ||||||||||||||||||||||||||||||    
T  35159715 agtaatttttgcattgaaagatgtgtaatcaatgcattaaaagtttaaaaagtttcttttttgagttgcaatttcttcttttggcttccttaactagt 35159812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 34502944 - 34502885
Alignment:
Q  32 taatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctatttt 91  Q
    |||| |||| |||||||| |||||||||||||||||||||||||||||||| ||| ||||    
T  34502944 taatatttgcattgaaagttgtgtaatcaatgcattaaaagcttaaaaaatatctttttt 34502885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 52435477 - 52435380
Alignment:
Q  32 taatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 129  Q
    |||| |||| |||||||  ||| |||||||||||||||||| ||||||| | | | |||| | || || ||||||||||||||||||||||| |||||    
T  52435477 taatatttgcattgaaaactgtataatcaatgcattaaaagattaaaaagtatttttttttattttcactttcttcttttggcttccttaaccagtgc 52435380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 321871 - 321904
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagtaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  321871 aaaatggacaagtattatgaaacggagggagtaa 321904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 284578 - 284610
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  284578 aaaatggacaagtattatgaaacggagggagta 284610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 23045311 - 23045279
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  23045311 aaaatggacaagtattatgaaacggagggagta 23045279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 23526484 - 23526516
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  23526484 aaaatggacaagtattatgaaacggagggagta 23526516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24771938 - 24771906
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  24771938 aaaatggacaagtattatgaaacggagggagta 24771906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33082989 - 33083021
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  33082989 aaaatggacaagtattatgaaacggagggagta 33083021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40783689 - 40783657
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  40783689 aaaatggacaagtattatgaaacggagggagta 40783657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 46593862 - 46593775
Alignment:
Q  42 attgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaat-ttcttcttttggcttccttaactagtg 128  Q
    |||||||  ||||||||||||| || |||| |||||||| | | | ||||||||| |||  |||||||||||||||||||||| ||||    
T  46593862 attgaaatttgtgtaatcaatgtataaaaaacttaaaaagtatattttttgacttacaaaattcttcttttggcttccttaaccagtg 46593775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 51065001 - 51065035
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagtaat 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  51065001 aaaatggacaagtattgtgaaacggagggagtaat 51065035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 47037884 - 47037852
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    ||||| |||||||||||||||||||||||||||    
T  47037884 aaaatagacaagtattatgaaacggagggagta 47037852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 157
Target Start/End: Complemental strand, 13068321 - 13068198
Alignment:
Q  32 taatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgccc 131  Q
    |||| |||| |||||||| ||||||||||||| |||||||| ||||||| ||||| ||||||||  |||||| ||||||| ||||||||||| |||| ||    
T  13068321 taatatttgcattgaaagttgtgtaatcaatgtattaaaagtttaaaaagtgtcttttttgactcacaatttattcttttagcttccttaaccagtg-cc 13068223  T
Q  132 ggagtcaccggttaacatgatcctaa 157  Q
    || || |||||||||||||| |||||    
T  13068222 ggggt-accggttaacatgaccctaa 13068198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 12506869 - 12506776
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 123  Q
    |||||| ||| ||||||||| ||| |||||||| ||||||||  ||||||| ||||| ||||||||| |||||||||||||| | |||||||||    
T  12506869 agtaatatttttattgaaagttgtataatcaatacattaaaaatttaaaaagtgtcttttttgacttacaatttcttcttttagtttccttaac 12506776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 31452292 - 31452222
Alignment:
Q  58 tcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtg 128  Q
    ||||||||||||||||||||||||||||  |||||| ||  |||||||||||||| |||||||||| ||||    
T  31452292 tcaatgcattaaaagcttaaaaaatgtcatttttgagttaaaatttcttcttttgacttccttaaccagtg 31452222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 42027508 - 42027605
Alignment:
Q  31 gtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtg 128  Q
    |||||||||| ||| |||   ||||||||||| ||||||||| |||||| || ||| |||| |||| ||||||||||||||| |||||||||| ||||    
T  42027508 gtaatttttgcattaaaaaccgtgtaatcaatacattaaaagtttaaaatatatctttttttacttgcaatttcttcttttgacttccttaaccagtg 42027605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 38939324 - 38939415
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaa-gcttaaaaaatgtctattttgac-ttccaatttcttcttttggcttcct 119  Q
    ||||||||||  ||||||||||||||||||||||||||||||  | | |||| ||||| ||||||| || ||| ||||||||||||||||||    
T  38939324 agtaattttttcattgaaagatgtgtaatcaatgcattaaaattcctcaaaagtgtcttttttgactttgcaaattcttcttttggcttcct 38939415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 45394113 - 45394196
Alignment:
Q  42 attgaaagatgtgtaatcaatgcattaaaagcttaaaaaa--tgtctattttgacttccaatttcttcttttggcttccttaac 123  Q
    |||||||| ||||||||||||| |||||||| ||||||||  | ||| |||| ||||  |||||||||||||| ||||||||||    
T  45394113 attgaaagttgtgtaatcaatgtattaaaagtttaaaaaaagtatctttttttacttataatttcttcttttgacttccttaac 45394196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 40918763 - 40918729
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagtaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  40918763 aaaatggacaagtattatgaaacggagggagtaat 40918729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 31969568 - 31969660
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 123  Q
    |||||| |||| |||||||| | | ||||||||  |||||||  ||||||  ||||| ||||||||| ||||||||||||||||||| ||||||    
T  31969568 agtaatatttgcattgaaagttatttaatcaataaattaaaaatttaaaatgtgtct-ttttgacttacaatttcttcttttggctttcttaac 31969660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7147158 - 7147190
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  7147158 aaaatggacaagtattatgaaacggagggagta 7147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 11646357 - 11646325
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  11646357 aaaatggacaagtattatgaaacggagggagta 11646325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30999556 - 30999524
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  30999556 aaaatggacaagtattatgaaacggagggagta 30999524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36068325 - 36068357
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  36068325 aaaatggacaagtattatgaaacggagggagta 36068357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40058335 - 40058303
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  40058335 aaaatggacaagtattatgaaacggagggagta 40058303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43275431 - 43275399
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  43275431 aaaatggacaagtattatgaaacggagggagta 43275399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 11708820 - 11708932
Alignment:
Q  37 tttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgcccggagt 136  Q
    ||||||||||||| |||||  ||| ||||||||| |||||||||  || | |||||||||  ||||||  ||||| ||||||||||| ||||||   ||     
T  11708820 tttgtattgaaagttgtgttgtcattgcattaaaggcttaaaaa--gtgttttttgacttaaaatttccacttttagcttccttaaccagtgccacaagg 11708917  T
Q  137 caccggttaacatga 151  Q
    ||| |||||||||||    
T  11708918 cactggttaacatga 11708932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 36068112 - 36068074
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagtaattttt 39  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  36068112 aaaatggacatgtattttgaaacggagggagtaattttt 36068074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37345816 - 37345849
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagtaa 34  Q
    |||||||||||||||||||||||||| |||||||    
T  37345816 aaaatggacaagtattatgaaacggaaggagtaa 37345849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2539962 - 2539930
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||| ||||||    
T  2539962 aaaatggacaagtattatgaaacggaaggagta 2539930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 11174255 - 11174223
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||| ||||||||||||||||||||||||||    
T  11174255 aaaatgaacaagtattatgaaacggagggagta 11174223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 21622731 - 21622643
Alignment:
Q  42 attgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgcc 130  Q
    |||||||| |||||||||||||||||||||  || |||||||||| |||| |||| |||||| ||||||||||||||||||| ||||||    
T  21622731 attgaaagttgtgtaatcaatgcattaaaaatttgaaaaatgtcttttttaacttacaattttttcttttggcttccttaaccagtgcc 21622643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 28115735 - 28115647
Alignment:
Q  36 ttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaa-tgtctattttgacttccaatttcttcttttggcttccttaac 123  Q
    |||||||||||||| |||| | | ||||||||||||| |||||||| ||||| |||| | || |||||| |||||||||||||||||||    
T  28115735 ttttgtattgaaagctgtgcagtgaatgcattaaaagtttaaaaaaatgtctttttttatttacaattttttcttttggcttccttaac 28115647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 44655144 - 44655045
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgc 129  Q
    |||||| |||| |||| ||| | ||||||||||||||||||||  |||||||| ||| |||  | ||  ||||||||||||||||||||||||| |||||    
T  44655144 agtaatatttgcattggaagttctgtaatcaatgcattaaaagtataaaaaatatcttttt--atttttaatttcttcttttggcttccttaaccagtgc 44655047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 45096888 - 45096780
Alignment:
Q  46 aaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgcccggagtcaccggtta 145  Q
    |||| ||||||||||||| |||||||| ||||||  | | | |||| |||| ||||||||||||||| |||||||||| |||||   | | ||| |||||    
T  45096888 aaagctgtgtaatcaatgtattaaaagtttaaaatgtatattttttaacttacaatttcttcttttgacttccttaacgagtgcttcggggcactggtta 45096789  T
Q  146 acatgatcc 154  Q
    |||||||||    
T  45096788 acatgatcc 45096780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 12071805 - 12071840
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagtaatt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  12071805 aaaatggacaagtattatgaaacggagggagtaatt 12071840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 38616985 - 38616895
Alignment:
Q  32 taatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaa 122  Q
    |||| ||| ||||||||| |||||||||||| ||||||||  |||| || | ||| |||||||||  | |||||||||||| |||||||||    
T  38616985 taatatttatattgaaagttgtgtaatcaatacattaaaatattaacaagtatcttttttgacttttactttcttcttttgccttccttaa 38616895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 14261289 - 14261321
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  14261289 aaaatggacaagtattatgaaacggagggagta 14261321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 21310666 - 21310698
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  21310666 aaaatggacaagtattatgaaacggagggagta 21310698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24706279 - 24706247
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  24706279 aaaatggacaagtattatgaaacggagggagta 24706247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25704896 - 25704928
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  25704896 aaaatggacaagtattatgaaacggagggagta 25704928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44569082 - 44569114
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  44569082 aaaatggacaagtattatgaaacggagggagta 44569114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 21661567 - 21661537
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggag 31  Q
    |||||||||||||||||||||||||||||||    
T  21661567 aaaatggacaagtattatgaaacggagggag 21661537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 21670331 - 21670301
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggag 31  Q
    |||||||||||||||||||||||||||||||    
T  21670331 aaaatggacaagtattatgaaacggagggag 21670301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 40122519 - 40122481
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagtaattttt 39  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  40122519 aaaatggacaagtattatgaaacggagagagtacttttt 40122481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 39403042 - 39402997
Alignment:
Q  36 ttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaa 81  Q
    |||| |||||||  |||||||||||||||||||||| |||||||||    
T  39403042 ttttatattgaatcatgtgtaatcaatgcattaaaatcttaaaaaa 39402997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 20249046 - 20249014
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    ||||||||||||||||||||||||||| |||||    
T  20249046 aaaatggacaagtattatgaaacggagtgagta 20249014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22321300 - 22321268
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    ||||| |||||||||||||||||||||||||||    
T  22321300 aaaatagacaagtattatgaaacggagggagta 22321268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39295421 - 39295453
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||| ||||||    
T  39295421 aaaatggacaagtattatgaaacggaaggagta 39295453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 4601446 - 4601355
Alignment:
Q  42 attgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgcccgg 133  Q
    |||||||| |||||||||||||||||||||  ||||||| | ||| |||||| ||| |||||||||||||||||||||| || |||| ||||    
T  4601446 attgaaagttgtgtaatcaatgcattaaaaatttaaaaagtatcttttttgatttcaaatttcttcttttggcttccttcacaagtgtccgg 4601355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 7246625 - 7246531
Alignment:
Q  37 tttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgccc 131  Q
    |||| ||||| || |||||||||||| ||||||||||||||||||| ||| |||| | ||  ||||||||||||| || ||||||||||||||||    
T  7246625 tttgcattgatagttgtgtaatcaatacattaaaagcttaaaaaatatcttttttaatttagaatttcttcttttagcatccttaactagtgccc 7246531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 33755704 - 33755629
Alignment:
Q  58 tcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgcccgg 133  Q
    ||||||||||||||||||||||| ||||  |||||| ||  |||||| |||||||||||||||||| |||||||||    
T  33755704 tcaatgcattaaaagcttaaaaagtgtcatttttgagttaaaatttcctcttttggcttccttaaccagtgcccgg 33755629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 3435827 - 3435734
Alignment:
Q  30 agtaatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 123  Q
    |||||| |||| |||||||| | |||||||||||||||| || |||||||| ||||| |||||| ||  ||||||||||||| ||||| |||||    
T  3435827 agtaatatttgcattgaaagttatgtaatcaatgcattataaacttaaaaagtgtcttttttgatttataatttcttcttttagcttctttaac 3435734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4129671 - 4129705
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagtaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  4129671 aaaatggacaagtattatgaaacggagggagtaat 4129705  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1605823 - 1605855
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  1605823 aaaatggacaagtattatgaaacggagggagta 1605855  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7761545 - 7761577
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  7761545 aaaatggacaagtattatgaaacggagggagta 7761577  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8626727 - 8626759
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  8626727 aaaatggacaagtattatgaaacggagggagta 8626759  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15064727 - 15064695
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  15064727 aaaatggacaagtattatgaaacggagggagta 15064695  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17942688 - 17942720
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  17942688 aaaatggacaagtattatgaaacggagggagta 17942720  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29260437 - 29260469
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  29260437 aaaatggacaagtattatgaaacggagggagta 29260469  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 20621834 - 20621748
Alignment:
Q  36 ttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 123  Q
    |||| |||| |||| |||||| ||||| ||||||||| ||||||| | || |||||||||   |||||||| ||||||||||||||||    
T  20621834 ttttatattaaaagttgtgtattcaatacattaaaagtttaaaaagtttcaattttgactcaaaatttctt-ttttggcttccttaac 20621748  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 5583620 - 5583697
Alignment:
Q  46 aaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 123  Q
    |||| |||||||||||||||||||| ||||||||||| ||  |||| | ||  |||||  |||||| |||||||||||    
T  5583620 aaagttgtgtaatcaatgcattaaatgcttaaaaaatatcattttttatttaaaattttatctttttgcttccttaac 5583697  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13757452 - 13757484
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||| ||||||    
T  13757452 aaaatggacaagtattatgaaacggatggagta 13757484  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 31559770 - 31559738
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||| ||||||||||||||||||||||||    
T  31559770 aaaatggagaagtattatgaaacggagggagta 31559738  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 20869362 - 20869456
Alignment:
Q  37 tttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaactagtgccc 131  Q
    |||| |||||||| |||||||||||||||||||||||||||||| ||||  |||| | ||  |||||  |||||||||||||||||| |||||||    
T  20869362 tttgcattgaaagttgtgtaatcaatgcattaaaagcttaaaaagtgtcatttttaaattaaaattttctcttttggcttccttaaccagtgccc 20869456  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 123
Target Start/End: Original strand, 36784224 - 36784315
Alignment:
Q  32 taatttttgtattgaaagatgtgtaatcaatgcattaaaagcttaaaaaatgtctattttgacttccaatttcttcttttggcttccttaac 123  Q
    |||| |||| |||||||| |||||||||||| ||||||||| ||||||| ||||  |||| ||||  | |||||||||||  ||||||||||    
T  36784224 taatatttgcattgaaagctgtgtaatcaatacattaaaagattaaaaagtgtcctttttaacttttactttcttcttttttcttccttaac 36784315  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12806885 - 12806853
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  12806885 aaaatggacaagtattatgaaacggagggagta 12806853  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 25683261 - 25683229
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  25683261 aaaatggacaagtattatgaaacggagggagta 25683229  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30720524 - 30720492
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  30720524 aaaatggacaagtattatgaaacggagggagta 30720492  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36561131 - 36561099
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  36561131 aaaatggacaagtattatgaaacggagggagta 36561099  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40886642 - 40886610
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  40886642 aaaatggacaagtattatgaaacggagggagta 40886610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 3425790 - 3425747
Alignment:
Q  88 ttttgacttccaatttcttcttttggcttccttaactagtgccc 131  Q
    ||||||||| ||||||||||||||||||| |||||| |||||||    
T  3425790 ttttgactttcaatttcttcttttggctttcttaacgagtgccc 3425747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 10285090 - 10285058
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    ||||| |||||||||||||||||||||||||||    
T  10285090 aaaatagacaagtattatgaaacggagggagta 10285058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 23097756 - 23097724
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    |||||||||||||||||||||||||| ||||||    
T  23097756 aaaatggacaagtattatgaaacggaaggagta 23097724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25773894 - 25773926
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagta 33  Q
    ||||||||||||||||||||||||||| |||||    
T  25773894 aaaatggacaagtattatgaaacggagagagta 25773926  T

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Target: scaffold1770 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 406 - 440
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagtaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  406 aaaatggacaagtattatgaaacggagggagtaat 440  T

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Target: scaffold0054 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 45698 - 45732
Alignment:
Q  1 aaaatggacaagtattatgaaacggagggagtaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  45698 aaaatggacaagtattatgaaacggagggagtaat 45732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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