View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8580_low_43 (Length: 262)

Name: NF8580_low_43
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8580_low_43
NF8580_low_43
[»] chr4 (3 HSPs)
chr4 (93-196)||(6767156-6767259)
chr4 (93-162)||(48509854-48509924)
chr4 (94-162)||(55430291-55430360)
[»] chr1 (3 HSPs)
chr1 (93-151)||(1859277-1859336)
chr1 (93-151)||(8973443-8973502)
chr1 (93-151)||(45230704-45230763)
[»] chr7 (1 HSPs)
chr7 (95-151)||(46715309-46715366)
[»] chr2 (2 HSPs)
chr2 (95-162)||(25787516-25787584)
chr2 (94-157)||(3041748-3041811)
[»] chr3 (2 HSPs)
chr3 (93-162)||(26748539-26748609)
chr3 (93-162)||(34750841-34750911)


Alignment Details
Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 6767259 - 6767156
Alignment:
Q  93 gtaaaagtatttgttgtcttgatttatgtataaagtt-aaatgtgacaatttaaaaggaaaagatggagtaggaaaaatgtcaaattatagatgtagagt 191  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  6767259 gtaaaagtatttgctgtcttgatttatgtataaagttaaaatgtgataatttaaaaggaaaagatggaatagg-aaaatgtcaaattatagatgtagagt 6767161  T
Q  192 ctgtg 196  Q
    |||||    
T  6767160 ctgtg 6767156  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 48509924 - 48509854
Alignment:
Q  93 gtaaaagtatttgttgtcttgatttatgtataaagt-taaatgtgacaatttaaaaggaaaagatggagta 162  Q
    |||||| ||||||||||||||||||||||| |||||  ||||||||||||| |||||||| ||| ||||||    
T  48509924 gtaaaaatatttgttgtcttgatttatgtaaaaagtcaaaatgtgacaattaaaaaggaatagagggagta 48509854  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 55430360 - 55430291
Alignment:
Q  94 taaaagtatttgttgtcttgatttatgtataaagttaaa-tgtgacaatttaaaaggaaaagatggagta 162  Q
    |||||||||||||| ||||| ||| |||| ||||| ||| |||||||||| |||||||||||| ||||||    
T  55430360 taaaagtatttgttatcttggtttgtgtaaaaagtaaaaatgtgacaattaaaaaggaaaagagggagta 55430291  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 1859277 - 1859336
Alignment:
Q  93 gtaaaagtatttgttgtcttgatttatgtataaagtt-aaatgtgacaatttaaaaggaa 151  Q
    |||||||||||||||||||||||||||||| |||||| |||||||| |||| ||||||||    
T  1859277 gtaaaagtatttgttgtcttgatttatgtaaaaagttaaaatgtgataattaaaaaggaa 1859336  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 8973502 - 8973443
Alignment:
Q  93 gtaaaagtatttgttgtcttgatttatgtataaagt-taaatgtgacaatttaaaaggaa 151  Q
    |||||||||||||||||||||||||||||| |||||  |||| |||||||| ||||||||    
T  8973502 gtaaaagtatttgttgtcttgatttatgtaaaaagtcaaaatatgacaattaaaaaggaa 8973443  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 45230704 - 45230763
Alignment:
Q  93 gtaaaagtatttgttgtcttgatttatgtataaagt-taaatgtgacaatttaaaaggaa 151  Q
    ||||||||||||||||||||| |||||||| |||||  |||||| |||||| ||||||||    
T  45230704 gtaaaagtatttgttgtcttggtttatgtaaaaagtcaaaatgtaacaattaaaaaggaa 45230763  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 46715366 - 46715309
Alignment:
Q  95 aaaagtatttgttgtcttgatttatgtataaagt-taaatgtgacaatttaaaaggaa 151  Q
    ||||||||||||||||||||||| |||| |||||  ||||||||||||| ||||||||    
T  46715366 aaaagtatttgttgtcttgatttgtgtaaaaagtcaaaatgtgacaattaaaaaggaa 46715309  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 25787516 - 25787584
Alignment:
Q  95 aaaagtatttgttgtcttgatttatgtataaagt-taaatgtgacaatttaaaaggaaaagatggagta 162  Q
    ||||||||||||||||||| ||| |||| |||||  ||||||||||||| |||||||| ||| ||||||    
T  25787516 aaaagtatttgttgtcttggtttgtgtaaaaagtcaaaatgtgacaattaaaaaggaacagagggagta 25787584  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 3041748 - 3041811
Alignment:
Q  94 taaaagtatttgttgtcttgatttatgtataaagttaaatgtgacaatttaaaaggaaaagatg 157  Q
    |||||||||||||||||||| ||| |||| ||||| |||||| |||||| ||||| || |||||    
T  3041748 taaaagtatttgttgtcttggtttgtgtaaaaagtcaaatgtaacaattaaaaagtaacagatg 3041811  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 26748539 - 26748609
Alignment:
Q  93 gtaaaagtatttgttgtcttgatttatgtataaagt-taaatgtgacaatttaaaaggaaaagatggagta 162  Q
    ||||||| ||||||||||||||||| |||| |||||  ||||||||||||| |||||| | ||| ||||||    
T  26748539 gtaaaagcatttgttgtcttgatttgtgtaaaaagtcaaaatgtgacaattaaaaagggacagagggagta 26748609  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 34750841 - 34750911
Alignment:
Q  93 gtaaaagtatttgttgtcttgatttatgtataaag-ttaaatgtgacaatttaaaaggaaaagatggagta 162  Q
    ||||||||||||||||||||||||| |||| ||||   ||||| ||||||| |||||||| ||| ||||||    
T  34750841 gtaaaagtatttgttgtcttgatttgtgtaaaaagacaaaatgagacaattaaaaaggaatagagggagta 34750911  T

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