View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_low_44 (Length: 256)
Name: NF8580_low_44
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 39564639 - 39564811
Alignment:
| Q |
63 |
gttctagtccaaaacagttgcccccaagtcggcagtgttgacaagatgcctgcttgataattgtgcaatgtattgaaggtcattattatccaacgaagtg |
162 |
Q |
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| T |
39564639 |
gttctagtccaaaacagttgcccc-aagtcggcagtgttgacaagatgcctgcttgataattgtgcaatgtattgaaggtcattattatccaacgaagtg |
39564737 |
T |
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| Q |
163 |
tcttcaactattgacctacaagatgtcattctataaaaaaggtaatgacacaacgtcaatatagtgaagcgact |
236 |
Q |
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| T |
39564738 |
tcttcaattattgacctacaagatgtcattctataaaaaaggtaatgacacaacgtcaatatagtgaagcgact |
39564811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 39567452 - 39567585
Alignment:
| Q |
58 |
tcattgttctagtccaaaacagttgcccccaagtcggcagtgttg-----acaagatgcctgcttgataattgtgcaatgtattgaaggtcattattatc |
152 |
Q |
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| T |
39567452 |
tcattggtctagtccaaaacagttgcccccaagtcggcaatgttgtttagacaagatgcctacatgataattgtgcaatttattgaaggtcattattata |
39567551 |
T |
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| Q |
153 |
caacgaagtgtc-ttcaactattgacctacaaga |
185 |
Q |
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| T |
39567552 |
gaacgaagtgtctttcaactactgacgtacaaga |
39567585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 39563463 - 39563509
Alignment:
| Q |
21 |
agccttttagcttagagtgaatcgaaggaatgggtcttcattgttct |
67 |
Q |
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| T |
39563463 |
agccttttagcttagagtgaatcgaaggaatgggtcttcattgttct |
39563509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 39567396 - 39567431
Alignment:
| Q |
26 |
tttagcttagagtgaatcgaaggaatgggtcttcat |
61 |
Q |
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| T |
39567396 |
tttagcttagagtgaatccaaggaatgggtcttcat |
39567431 |
T |
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