View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8580_low_45 (Length: 255)
Name: NF8580_low_45
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_low_45 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 37592656 - 37592885
Alignment:
| Q |
15 |
agtttatttaggtttgattactttggaaatctcttaataattcaaagatttttaacatctagaacctagctggatcttatctgtaagactgtagcaaaca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37592656 |
agtttatttaggtttgattactttggaaatctcttaataattcaaagatttttaacatctagaacctagctggatcttatctgtaagactgtagcaaaca |
37592755 |
T |
|
| Q |
115 |
tgatcaagaggatacaagaggaaattggcagatatttaacattgagaatcagcatttaaatataggnnnnnnntcaatggacatttgaatgannnnnnnc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
37592756 |
tgatcaagaggatacaagaggaaattggcagatctttaacattgagaatcagcatttaaatataggaaaaaaatcaatggacatttgaatgatttttttc |
37592855 |
T |
|
| Q |
215 |
ttttaagggaatcactcctcatgcatctct |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
37592856 |
ttttaagggaatcactcctcatgcatctct |
37592885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 37585564 - 37585623
Alignment:
| Q |
39 |
ggaaatctcttaataattcaaagatttttaacatctagaacctagctggatcttatctgt |
98 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||| |
|
|
| T |
37585564 |
ggaaatctcttaataattcaaagacatttaacatctaggacctggctggatcttacctgt |
37585623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 55117141 - 55117192
Alignment:
| Q |
17 |
tttatttaggtttgattactttggaaatctcttaataattcaaagattttta |
68 |
Q |
| |
|
||||||||| |||||| ||||||||||||| || |||||||||||||||||| |
|
|
| T |
55117141 |
tttatttagttttgatcactttggaaatcttttgataattcaaagattttta |
55117192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University