View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_low_47 (Length: 250)
Name: NF8580_low_47
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 36464693 - 36464935
Alignment:
| Q |
1 |
aactgtgacatacaattcaattcaaaacgaggtgctccaaacacttatgaattagaagtagaaggatatatagaaaaatg---------ttattcctcaa |
91 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36464693 |
aactgtgacatacaattcaattcaaaacgaggtgctcaaaacacttatgaattagaagtagaaggatatatagaaaaatggttgagatattattcctcaa |
36464792 |
T |
|
| Q |
92 |
gttgctcttttacattctctcactaactcctccaactctcactctcttaaccaagaatgtctctactctcatcatagtagtggcatatccttccttaatt |
191 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36464793 |
gttgctctttcacattctctcactaactcctccaactctcactctcttaaccaagaatgtctctactctcatcatagtagtggcata----tccttaatt |
36464888 |
T |
|
| Q |
192 |
gagcaatcgaagcttaaccgcagaatactttatattttccgcttctc |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36464889 |
gagcaatcgaagcttaaccgcagaatactttatattttccgcttctc |
36464935 |
T |
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