View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8580_low_49 (Length: 246)

Name: NF8580_low_49
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8580_low_49
NF8580_low_49
[»] scaffold1643 (1 HSPs)
scaffold1643 (19-233)||(396-619)
[»] chr3 (17 HSPs)
chr3 (19-229)||(6942166-6942385)
chr3 (19-204)||(6841157-6841351)
chr3 (19-229)||(6528597-6528816)
chr3 (18-193)||(6523065-6523249)
chr3 (19-156)||(7586183-7586320)
chr3 (19-198)||(6556298-6556486)
chr3 (31-156)||(6945580-6945705)
chr3 (19-156)||(6733986-6734123)
chr3 (19-156)||(6781540-6781677)
chr3 (31-134)||(8452969-8453072)
chr3 (31-139)||(6730318-6730426)
chr3 (31-142)||(6450390-6450501)
chr3 (33-130)||(8469898-8469995)
chr3 (31-152)||(6796345-6796466)
chr3 (19-112)||(8570535-8570628)
chr3 (18-156)||(6481565-6481703)
chr3 (168-233)||(8588149-8588214)
[»] scaffold0425 (1 HSPs)
scaffold0425 (19-233)||(9346-9569)


Alignment Details
Target: scaffold1643 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 619 - 396
Alignment:
Q  19 attgcaacaagatggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacgag 118  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||   |||||||||||||||||||||||||||||| |||| ||    
T  619 attgcaacaagatggaggcatcaattcccaagagtgataatatgatagagttagatataaggagatgtgatagaattttggtaaatgaattgtcgaccag 520  T
Q  119 cctgaaaaggttattcctttgtgataatcagtacaccg---------tgcaccaaaatttaatcaattttccctttcttgaagagttggtattggatttt 209  Q
    | ||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  519 cttgaaaaggttattcctttgtgataatcagtacaccgagttctccccgcaccaaaatttaatcaattttccctttcttgaagagttgcaattggatttt 420  T
Q  210 actggctttgtggaatgtccctct 233  Q
    ||||||||||||||||||||||||    
T  419 actggctttgtggaatgtccctct 396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 6942385 - 6942166
Alignment:
Q  19 attgcaacaagatggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacgag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||    
T  6942385 attgcaacaagatggaggcatcaattcccaagtgtgataatatgatagagttagatatacagagatgtgatagaattttggtaaatgaattgccgaccag 6942286  T
Q  119 cctgaaaaggttattcctttgtgataatcagtacaccg---------tgcaccaaaatttaatcaattttccctttcttgaagagttggtattggatttt 209  Q
    | ||||||| |||||||||||| |||||||||||||||         ||||||||||| ||||||||||||||||||| ||||||||||| |||||||||    
T  6942285 cttgaaaagtttattcctttgttataatcagtacaccgagttctccttgcaccaaaatgtaatcaattttccctttctcgaagagttggtgttggatttt 6942186  T
Q  210 actggctttgtggaatgtcc 229  Q
    ||||||||||||||||||||    
T  6942185 actggctttgtggaatgtcc 6942166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 6841157 - 6841351
Alignment:
Q  19 attgcaacaagatggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacgag 118  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||    
T  6841157 attgcaacaagatggaggcatcaattcccaagagtgataatatgatagagttagatatacagagatgtgatagaattttggtaaatgaattgccgaccag 6841256  T
Q  119 cctgaaaaggttattcctttgtgataatcagtaca---------ccgtgcaccaaaatttaatcaattttccctttcttgaagagttggtattgg 204  Q
    | ||||||||||| |||||||||||||||| ||||         ||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  6841257 cttgaaaaggttactcctttgtgataatcaatacacggagttctccgtggaccaaaatttaatcaattttccctttcttgaagagttggaattgg 6841351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 6528597 - 6528816
Alignment:
Q  19 attgcaacaagatggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacgag 118  Q
    |||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||| ||||||||    
T  6528597 attgcagcaagatggaggcaacaattcccaagtgtgataatatgatagagttagatatacagacatgtgatagaattttggtaaatgaatttccgacgag 6528696  T
Q  119 cctgaaaaggttattcctttgtgataatcagtacaccg---------tgcaccaaaatttaatcaattttccctttcttgaagagttggtattggatttt 209  Q
      ||||||||||||||||||||||||||||||||||||         |||| |||||| |||| |||||||||||||||||||||||||  |||||||      
T  6528697 tttgaaaaggttattcctttgtgataatcagtacaccgagttatccatgcagcaaaatgtaataaattttccctttcttgaagagttggggttggattgg 6528796  T
Q  210 actggctttgtggaatgtcc 229  Q
    | ||||| |||| |||||||    
T  6528797 agtggctctgtgaaatgtcc 6528816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 6523065 - 6523249
Alignment:
Q  18 aattgcaacaagatggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||||| |    
T  6523065 aattgcaacaagatggaggcatcaattcccaagtgtgataatatgatagagttagatatacagagttgtgatagaattttggtaaatgaattgccgacta 6523164  T
Q  118 gcctgaaaaggttattcctttgtgataatc---------agtacaccgtgcaccaaaatttaatcaattttccctttcttgaaga 193  Q
    ||||||||| |||| |||||||  | ||||         ||| | ||||| ||||||||||||||||||||||||||||||||||    
T  6523165 gcctgaaaaagttactcctttggcaaaatcggaacacggagttctccgtggaccaaaatttaatcaattttccctttcttgaaga 6523249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 7586320 - 7586183
Alignment:
Q  19 attgcaacaagatggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacgag 118  Q
    ||||||| ||| |||| |||| |||||| |||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| |     
T  7586320 attgcaagaagttggaagcattaattccgaagtgtgataatatgatagagttagatataaagagatgtgatagaattttggtaaatgaattgccgacaaa 7586221  T
Q  119 cctgaaaaggttattcctttgtgataatcagtacaccg 156  Q
      ||||||| ||||||||||||||||||||||||||||    
T  7586220 tttgaaaagtttattcctttgtgataatcagtacaccg 7586183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 6556298 - 6556486
Alignment:
Q  19 attgcaacaagatggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacgag 118  Q
    |||||||| || |||||||||||||||||||| |||||||||| ||||||||||||||| | |  |||||||||||||||||||||||||||||||| ||    
T  6556298 attgcaacgagttggaggcatcaattcccaagagtgataatatgatagagttagatatacagaattgtgatagaattttggtaaatgaattgccgactag 6556397  T
Q  119 cctgaaaaggttattcctttgtgataatcagtaca---------ccgtgcaccaaaatttaatcaattttccctttcttgaagagttgg 198  Q
    |||||||| |||| ||||| |    |||| |||||         ||||||||||||||||||||||||||||||||||||||| |||||    
T  6556398 cctgaaaaagttactccttcggcgaaatcggtacacggagttctccgtgcaccaaaatttaatcaattttccctttcttgaagcgttgg 6556486  T

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Target: chr3; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 6945705 - 6945580
Alignment:
Q  31 tggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacgagcctgaaaaggtt 130  Q
    |||||| |||| |||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| |   ||||||||||    
T  6945705 tggaggtatcagttcccaagagtgataatatgatagagttagatatacagagatgtgatagaattttggtaaatgaattgccgacaaatttgaaaaggtt 6945606  T
Q  131 attcctttgtgataatcagtacaccg 156  Q
    ||| ||||||||||||||||||||||    
T  6945605 attactttgtgataatcagtacaccg 6945580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 6734123 - 6733986
Alignment:
Q  19 attgcaacaagatggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacgag 118  Q
    ||||||||||| |||| ||||||||||| |||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||| || ||    
T  6734123 attgcaacaagttggaagcatcaattcctaagtgtgataatatgatagagttagatatacggagatgtgatagaattttggtaaatgaattgcctaccag 6734024  T
Q  119 cctgaaaaggttattcctttgtgataatcagtacaccg 156  Q
      |||||| |||| |||||| ||| |||||||||||||    
T  6734023 tttgaaaaagttagtcctttctgaaaatcagtacaccg 6733986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 6781540 - 6781677
Alignment:
Q  19 attgcaacaagatggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacgag 118  Q
    ||||||||||| |||| ||||||||||| |||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||| || ||    
T  6781540 attgcaacaagttggaagcatcaattcctaagtgtgataatatgatagagttagatatacggagatgtgatagaattttggtaaatgaattgcctaccag 6781639  T
Q  119 cctgaaaaggttattcctttgtgataatcagtacaccg 156  Q
      |||||| |||| |||||| ||| |||||||||||||    
T  6781640 tttgaaaaagttagtcctttctgaaaatcagtacaccg 6781677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 8453072 - 8452969
Alignment:
Q  31 tggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacgagcctgaaaaggtt 130  Q
    |||| ||||||||||||||  |||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| ||| |||||| |||    
T  8453072 tggaagcatcaattcccaacggtgataatatcatagatttagatataaagagatgtgatagaattttggtaaatgaattgccgaccagcttgaaaaagtt 8452973  T
Q  131 attc 134  Q
    ||||    
T  8452972 attc 8452969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 6730318 - 6730426
Alignment:
Q  31 tggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacgagcctgaaaaggtt 130  Q
    |||||||||||||||||||| |||||||||||||||| ||| || ||    ||||||| || ||||||||||||||||||||||| ||| |||||| |||    
T  6730318 tggaggcatcaattcccaagggtgataatatcatagatttacatctagtgggatgtgaaagcattttggtaaatgaattgccgactagcttgaaaaagtt 6730417  T
Q  131 attcctttg 139  Q
    | |||||||    
T  6730418 agtcctttg 6730426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 6450390 - 6450501
Alignment:
Q  31 tggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacgagcctgaaaaggtt 130  Q
    |||||||||||||||||||| |||||||||||||||| ||| || ||    ||| ||| || ||||||||||||||||||||||| ||| |||||| |||    
T  6450390 tggaggcatcaattcccaagggtgataatatcatagatttacatctagtgggatatgaaagcattttggtaaatgaattgccgactagcttgaaaaagtt 6450489  T
Q  131 attcctttgtga 142  Q
    | ||||||||||    
T  6450490 agtcctttgtga 6450501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 8469995 - 8469898
Alignment:
Q  33 gaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacgagcctgaaaaggtt 130  Q
    |||||||| ||||||||| ||||||||||||||||||||||| || | |||||||||   |||||  ||||||||||||| || ||| ||||||||||    
T  8469995 gaggcatcgattcccaagggtgataatatcatagagttagatctacagagatgtgatcacattttaataaatgaattgccaaccagcttgaaaaggtt 8469898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 6796345 - 6796466
Alignment:
Q  31 tggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacgagcctgaaaaggtt 130  Q
    |||| ||||||||||| ||| |||||| |||| || ||||| ||||| | || |||| || ||||||||||||||||||||| || ||| |||||| |||    
T  6796345 tggaagcatcaattccaaagggtgatagtatcgtacagttatatatacagagttgtggtaaaattttggtaaatgaattgccaacaagcttgaaaaagtt 6796444  T
Q  131 attcctttgtgataatcagtac 152  Q
      |||||||| | |||||||||    
T  6796445 tgtcctttgtaaaaatcagtac 6796466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 8570535 - 8570628
Alignment:
Q  19 attgcaacaagatggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgcc 112  Q
    ||||||| ||| ||||||| ||||||||||||  ||||||||||  ||||||| || || ||  ||||||||| ||||||||||||||||||||    
T  8570535 attgcaagaagttggaggcttcaattcccaaggctgataatatcgaagagttatatctagatgaatgtgatagcattttggtaaatgaattgcc 8570628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 6481565 - 6481703
Alignment:
Q  18 aattgcaacaagatggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacga 117  Q
    |||||||||||| ||||||| ||||| ||  || ||||||||||| ||||||||  | |  |  ||||||| || |||||| |||| ||||||||||| |    
T  6481565 aattgcaacaagttggaggcttcaatgcctgagggtgataatatcttagagttatgtctgaagggatgtgacagcattttgataaaggaattgccgacca 6481664  T
Q  118 gcctgaaaaggttattcctttgtgataatcagtacaccg 156  Q
    || |||||| |||| |||||||||| |||| | ||||||    
T  6481665 gcttgaaaaagttagtcctttgtgaaaatcggcacaccg 6481703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 8588214 - 8588149
Alignment:
Q  168 ttaatcaattttccctttcttgaagagttggtattggattttactggctttgtggaatgtccctct 233  Q
    |||||||||||| | |||||||||||||||   ||||||||||||||||| ||||| |||||||||    
T  8588214 ttaatcaattttacatttcttgaagagttgtatttggattttactggcttagtggagtgtccctct 8588149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 9346 - 9569
Alignment:
Q  19 attgcaacaagatggaggcatcaattcccaagtgtgataatatcatagagttagatatatatagatgtgatagaattttggtaaatgaattgccgacgag 118  Q
    ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||||| ||    
T  9346 attgcaacaagttggaagcatcaattcccaagtgtgataatatgatagagttagatatacaaagttgtgatagaattttggtaaatgaattgccgaccag 9445  T
Q  119 cctgaaaaggttattcctttgtgataatcagtaca---------ccgtgcaccaaaatttaatcaattttccctttcttgaagagttggtattggatttt 209  Q
    | ||||||| ||| |||||||  | |||| |||||         | ||| ||||||||||||||||||||||||||||||||  ||||  ||||||||||    
T  9446 cttgaaaagtttactcctttggcaaaatcggtacactgagttctctgtggaccaaaatttaatcaattttccctttcttgaatcgttgcaattggatttt 9545  T
Q  210 actggctttgtggaatgtccctct 233  Q
    ||||||||||||||||||||||||    
T  9546 actggctttgtggaatgtccctct 9569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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