View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_low_5 (Length: 566)
Name: NF8580_low_5
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 17 - 548
Target Start/End: Complemental strand, 2564472 - 2563950
Alignment:
| Q |
17 |
catcaatatgatttttgtttaggattttggagaaaatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtatacaaaag |
116 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564472 |
catcaatattatttttgtttaggattttggagaaaatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtatacaaaag |
2564373 |
T |
|
| Q |
117 |
tccacctgagttaataataaatcaaatgctaattcagctcattccatcaataatgaattaatgttgattgaaataagattgacctataagtaaatatata |
216 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564372 |
tccacctgagttaataataa------------ttcagctcattccatcaataatgaattaatgttgattgaaataagattgacctataagtaaatatata |
2564285 |
T |
|
| Q |
217 |
ccaggagnnnnnnnaatctgtagagagtaacttcctggcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagtccttcttcccac |
316 |
Q |
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||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564284 |
ccaggtgtttttttaatctgtagagagtaacttccttgcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagtccttcttcccac |
2564185 |
T |
|
| Q |
317 |
catagaattcctagtaaaattattgagttaattctttctttggaacta---atgtttagtaaaagatcattagtttgttatatgtatctgtaaatataaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2564184 |
catagaattcctagtaaaattattgagttaattctttctttggaactactaatgtttagtaaaagatcattagtttgttatatgtatgtgtaaatataaa |
2564085 |
T |
|
| Q |
414 |
gacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcctgattccaaccttggttatctgtgatgtacttcaag |
513 |
Q |
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| T |
2564084 |
gacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcctgattccaaccttggttatctgtgatgtacttcaag |
2563985 |
T |
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| Q |
514 |
tatttgctttctccactggccttgtataaccaagc |
548 |
Q |
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|| |||||||||||||||||||||||||||||||| |
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| T |
2563984 |
tacttgctttctccactggccttgtataaccaagc |
2563950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 404 - 547
Target Start/End: Complemental strand, 2573944 - 2573801
Alignment:
| Q |
404 |
taaatataaagacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcctgattccaaccttggttatctgtgat |
503 |
Q |
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||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |||| ||| |||||||||||||| |||||| |
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| T |
2573944 |
taaatatgaatacctgtgttagtaatgtttgagctccaacaaatttgttatcccagctaaattcagacactgcttgactccaaccttggttacttgtgat |
2573845 |
T |
|
| Q |
504 |
gtacttcaagtatttgctttctccactggccttgtataaccaag |
547 |
Q |
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|||| |||||||||||||||| ||||| |||||||||| ||||| |
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| T |
2573844 |
gtacgtcaagtatttgctttccccactagccttgtatagccaag |
2573801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 2574367 - 2574246
Alignment:
| Q |
17 |
catcaatatgatttttgtttaggattttggagaaaatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtatacaaaag |
116 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||| |||||| ||| |
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| T |
2574367 |
catcaatatggtttttgtttaagattttggagaaaatgaatagtaccatggttgaggttgtggtatattgcaaattactgctatctctaatatacagaag |
2574268 |
T |
|
| Q |
117 |
tccacctgagttaataataaat |
138 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
2574267 |
cccacctgagttaacaataaat |
2574246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 328
Target Start/End: Complemental strand, 2574148 - 2574055
Alignment:
| Q |
235 |
tgtagagagtaacttcctggcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagtccttcttcccaccatagaattcct |
328 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||| ||||| | |||| ||| ||||| || | | |||| ||||| ||||||| |
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| T |
2574148 |
tgtagagagctacttcctggcatcaatgcacatataaatgattcagcatcagtctgaaacttggctaactcttccctcccgccataaaattcct |
2574055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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