View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8580_low_6 (Length: 544)

Name: NF8580_low_6
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8580_low_6
NF8580_low_6
[»] chr3 (20 HSPs)
chr3 (168-479)||(34033138-34033456)
chr3 (18-141)||(34033483-34033606)
chr3 (476-536)||(46690153-46690213)
chr3 (485-533)||(36899252-36899300)
chr3 (478-533)||(2388623-2388678)
chr3 (483-533)||(27475386-27475436)
chr3 (481-533)||(4199447-4199499)
chr3 (485-533)||(4199929-4199977)
chr3 (485-533)||(34949754-34949802)
chr3 (485-533)||(42606278-42606326)
chr3 (485-533)||(45539683-45539731)
chr3 (483-533)||(42606754-42606804)
chr3 (485-533)||(45539207-45539255)
chr3 (485-533)||(46689680-46689728)
chr3 (485-533)||(22407317-22407365)
chr3 (481-517)||(35300738-35300774)
chr3 (490-533)||(2389106-2389149)
chr3 (490-533)||(36899728-36899771)
chr3 (490-532)||(27475774-27475816)
chr3 (477-516)||(20831162-20831202)
[»] chr1 (17 HSPs)
chr1 (481-536)||(32266954-32267009)
chr1 (480-536)||(40124547-40124603)
chr1 (482-533)||(32266478-32266529)
chr1 (482-533)||(9122680-9122731)
chr1 (490-533)||(47410897-47410940)
chr1 (483-533)||(46802318-46802368)
chr1 (485-533)||(17968035-17968083)
chr1 (485-533)||(45230604-45230652)
chr1 (490-533)||(30428148-30428191)
chr1 (481-533)||(47410417-47410469)
chr1 (490-533)||(9123159-9123202)
chr1 (477-532)||(30427663-30427718)
chr1 (483-533)||(40124072-40124122)
chr1 (472-533)||(37717839-37717900)
chr1 (490-519)||(4288324-4288353)
chr1 (483-532)||(17968513-17968562)
chr1 (485-517)||(46802812-46802844)
[»] chr6 (11 HSPs)
chr6 (481-533)||(14257141-14257193)
chr6 (485-536)||(20824635-20824686)
chr6 (485-536)||(15147716-15147767)
chr6 (485-533)||(33107404-33107452)
chr6 (485-533)||(34984587-34984635)
chr6 (490-533)||(6162731-6162774)
chr6 (490-533)||(20824167-20824210)
chr6 (482-533)||(15148192-15148243)
chr6 (485-533)||(14257621-14257669)
chr6 (476-532)||(33106918-33106974)
chr6 (477-510)||(1336525-1336558)
[»] chr5 (23 HSPs)
chr5 (485-536)||(5746759-5746810)
chr5 (485-536)||(28641159-28641210)
chr5 (479-533)||(31162413-31162467)
chr5 (490-536)||(31162892-31162938)
chr5 (485-533)||(5747235-5747283)
chr5 (485-533)||(6543413-6543461)
chr5 (473-533)||(39402688-39402748)
chr5 (490-533)||(21949403-21949446)
chr5 (485-533)||(39402210-39402258)
chr5 (485-536)||(6543886-6543936)
chr5 (490-533)||(28641635-28641678)
chr5 (490-536)||(3879244-3879290)
chr5 (485-533)||(31093470-31093518)
chr5 (494-533)||(21949874-21949913)
chr5 (485-526)||(14625120-14625161)
chr5 (485-533)||(3192274-3192322)
chr5 (490-533)||(3191801-3191844)
chr5 (485-532)||(3878770-3878817)
chr5 (482-516)||(87149-87183)
chr5 (482-516)||(119005-119039)
chr5 (482-516)||(35373616-35373650)
chr5 (484-516)||(120019-120051)
chr5 (484-532)||(31092992-31093040)
[»] chr4 (28 HSPs)
chr4 (485-536)||(28957309-28957360)
chr4 (490-536)||(31227882-31227928)
chr4 (490-535)||(12107709-12107754)
chr4 (477-533)||(28957785-28957841)
chr4 (490-533)||(2669481-2669524)
chr4 (483-533)||(30546189-30546239)
chr4 (476-533)||(12922631-12922688)
chr4 (477-533)||(38026150-38026206)
chr4 (485-533)||(43980032-43980080)
chr4 (490-533)||(31228353-31228396)
chr4 (490-533)||(40841465-40841508)
chr4 (484-533)||(40841936-40841985)
chr4 (482-533)||(789890-789941)
chr4 (490-533)||(28505212-28505255)
chr4 (490-533)||(38025679-38025722)
chr4 (490-533)||(55347564-55347607)
chr4 (485-533)||(1317535-1317583)
chr4 (490-533)||(21235031-21235074)
chr4 (485-532)||(30545711-30545758)
chr4 (490-533)||(46262638-46262681)
chr4 (494-533)||(55348012-55348051)
chr4 (490-532)||(1317063-1317105)
chr4 (482-516)||(5544952-5544986)
chr4 (482-516)||(26168280-26168314)
chr4 (490-532)||(46263111-46263153)
chr4 (485-533)||(2669005-2669053)
chr4 (492-532)||(12923118-12923158)
chr4 (476-532)||(43979546-43979602)
[»] chr2 (24 HSPs)
chr2 (485-536)||(11450754-11450805)
chr2 (483-533)||(6476083-6476133)
chr2 (483-533)||(6476561-6476611)
chr2 (490-536)||(27378120-27378166)
chr2 (484-533)||(27377646-27377695)
chr2 (485-533)||(1804230-1804278)
chr2 (485-533)||(1804706-1804754)
chr2 (485-533)||(11451230-11451278)
chr2 (485-533)||(22704428-22704476)
chr2 (484-536)||(39096997-39097049)
chr2 (490-533)||(3854541-3854584)
chr2 (485-533)||(12090169-12090217)
chr2 (490-533)||(26525938-26525981)
chr2 (477-518)||(10711061-10711102)
chr2 (490-533)||(39096527-39096570)
chr2 (490-532)||(3854069-3854111)
chr2 (482-516)||(7083690-7083724)
chr2 (482-528)||(24093432-24093478)
chr2 (474-516)||(44934744-44934786)
chr2 (483-532)||(12089690-12089739)
chr2 (478-510)||(12851753-12851785)
chr2 (490-530)||(26525465-26525505)
chr2 (485-533)||(34037807-34037855)
chr2 (470-510)||(38305972-38306012)
[»] scaffold0085 (2 HSPs)
scaffold0085 (485-533)||(39895-39943)
scaffold0085 (485-536)||(39419-39470)
[»] chr7 (16 HSPs)
chr7 (482-533)||(28898024-28898075)
chr7 (485-533)||(1244486-1244534)
chr7 (485-533)||(33847864-33847912)
chr7 (485-533)||(41298719-41298767)
chr7 (484-533)||(18443652-18443701)
chr7 (490-533)||(18443179-18443222)
chr7 (481-532)||(41298238-41298289)
chr7 (485-533)||(29784422-29784470)
chr7 (485-533)||(33848340-33848388)
chr7 (485-532)||(884680-884727)
chr7 (485-532)||(1244009-1244056)
chr7 (485-532)||(28898505-28898552)
chr7 (490-533)||(29783938-29783981)
chr7 (479-516)||(12933122-12933159)
chr7 (484-533)||(22954043-22954092)
chr7 (485-525)||(30939616-30939656)
[»] chr8 (4 HSPs)
chr8 (483-533)||(12734169-12734219)
chr8 (484-533)||(29917581-29917630)
chr8 (485-533)||(29917103-29917151)
chr8 (490-532)||(12734649-12734691)
[»] scaffold0009 (2 HSPs)
scaffold0009 (482-536)||(107989-108044)
scaffold0009 (490-528)||(107898-107936)
[»] scaffold0177 (1 HSPs)
scaffold0177 (483-520)||(25899-25936)
[»] scaffold0148 (1 HSPs)
scaffold0148 (484-516)||(33055-33087)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 168 - 479
Target Start/End: Complemental strand, 34033456 - 34033138
Alignment:
Q  168 tggttgttaccgacggcgtggaaagcggttggagatgcgttgaggaagttgattagatcggagacgacggtgtgggtgctttcttccttcgccatgattt 267  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  34033456 tggttattaccgacggcgtggaaagcggttggagatgcgttgaggaagttgattagatcagagacgacggtgtgggtgctttcttccttcgccatgtttt 34033357  T
Q  268 tcggattcacgttacagtgcgttctagaactgtttcattaactcaatcaattttgacgttttcnnnnnnnnacggattcgaaccc-ggacct-----gcg 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||         ||||||||||||||   ||||       |    
T  34033356 tcggattcacgttacagtgcgttctagaactgtttcattaactcaatcaatttttatgtttt-ttttttttacggattcgaaccctcaaccttacacaag 34033258  T
Q  362 aagctcacacaatttcaacaacaatt--taaatgttgaaattattaggttggatgcagtgattagggattaaactttgttgcttcatttatacttgtgtt 459  Q
      ||||||||||||||||||||||||   |||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||  ||||||    
T  34033257 ctgctcacacaatttcaacaacaattcaaaaatgtcgaaattattaggttggatgtagtgattagggattaaacttcgttgcttcatttatatgtgtgtt 34033158  T
Q  460 tctaataataattgtcattt 479  Q
    ||||||||||||||||||||    
T  34033157 tctaataataattgtcattt 34033138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 34033606 - 34033483
Alignment:
Q  18 ttatggccagctttcagttcccaagtttccttctcagagatttgatggtaccctgcggattgtaaccgcttcttggcatcatctgaaaagagaaacggtg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34033606 ttatggccagctttcagttcccaagtttccttctcagagatttgatggtaccctgcggattgtaaccgcttcttggcatcgtctgaaaagagaaacggtg 34033507  T
Q  118 agtgaataaggagttgtgaattgg 141  Q
    ||||||||||||||||||||||||    
T  34033506 agtgaataaggagttgtgaattgg 34033483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 476 - 536
Target Start/End: Complemental strand, 46690213 - 46690153
Alignment:
Q  476 attttatttagggataaatatgtttttggtccctacattttacgcgattttgagaataatc 536  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46690213 attttacttagggttaaatatgtttttggtccctacattttacgcgattttgagaataatc 46690153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 36899252 - 36899300
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36899252 agggttaaatatgtttttggtccctacattttacgcgattttgagaata 36899300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 478 - 533
Target Start/End: Original strand, 2388623 - 2388678
Alignment:
Q  478 tttatttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  2388623 tttatttaggatcaaatatgtttttggtccctacattttacgcgattttgagaata 2388678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 483 - 533
Target Start/End: Original strand, 27475386 - 27475436
Alignment:
Q  483 ttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  27475386 ttagggttaaatatgtttttggtccctacattttgcgcgattttgagaata 27475436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 533
Target Start/End: Original strand, 4199447 - 4199499
Alignment:
Q  481 atttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||||||| ||||||||||||||||||||||||||| | ||||||||||||||    
T  4199447 atttagggttaaatatgtttttggtccctacattttgcacgattttgagaata 4199499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 4199977 - 4199929
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  4199977 agggttaaatatgtttttggtccctacattttgcgcgattttgagaata 4199929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 34949754 - 34949802
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  34949754 agggttaaatatgtttttggtccctacattttgcgcgattttgagaata 34949802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 42606278 - 42606326
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  42606278 agggttaaatttgtttttggtccctacattttacgcgattttgagaata 42606326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 45539731 - 45539683
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  45539731 agggttaaatatgtttttggtccctacattttacgcgattttaagaata 45539683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 483 - 533
Target Start/End: Complemental strand, 42606804 - 42606754
Alignment:
Q  483 ttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||||||    
T  42606804 ttagggttaaatatgtttttggtccctacattttatgcaattttgagaata 42606754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 45539207 - 45539255
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||| ||||||||||||||||||||||||||||||||| ||||||    
T  45539207 agggttaattatgtttttggtccctacattttacgcgattttaagaata 45539255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 46689680 - 46689728
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| |||||||||||||||| ||||||||||| |||||||||||||||    
T  46689680 agggttaaatatgtttttggttcctacattttatgcgattttgagaata 46689728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 22407365 - 22407317
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||| ||||    
T  22407365 agggttaaatatgtttttggtccctacattttgcgcaattttgaaaata 22407317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 517
Target Start/End: Original strand, 35300738 - 35300774
Alignment:
Q  481 atttagggataaatatgtttttggtccctacatttta 517  Q
    |||||||| ||||||||||||||||||||||||||||    
T  35300738 atttagggttaaatatgtttttggtccctacatttta 35300774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 533
Target Start/End: Complemental strand, 2389149 - 2389106
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||| |||||| || ||||||||||||    
T  2389149 taaatatgtttttggtccctatattttatgcaattttgagaata 2389106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 533
Target Start/End: Complemental strand, 36899771 - 36899728
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||| |||||| || ||||||||||||    
T  36899771 taaatatgtttttggtccctatattttatgcaattttgagaata 36899728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 27475816 - 27475774
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    |||||||||||||||||||||  |||||| |||||||||||||    
T  27475816 taaatatgtttttggtccctaagttttacacgattttgagaat 27475774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 516
Target Start/End: Complemental strand, 20831202 - 20831162
Alignment:
Q  477 ttttattta-gggataaatatgtttttggtccctacatttt 516  Q
    ||||||||| ||| |||||||||||||||||||||||||||    
T  20831202 ttttatttatgggttaaatatgtttttggtccctacatttt 20831162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 481 - 536
Target Start/End: Complemental strand, 32267009 - 32266954
Alignment:
Q  481 atttagggataaatatgtttttggtccctacattttacgcgattttgagaataatc 536  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32267009 atttagggttaaatatgtttttggtccctacattttacgcgattttgagaataatc 32266954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 40124603 - 40124547
Alignment:
Q  480 tatttagggataaatatgtttttggtccctacattttacgcgattttgagaataatc 536  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  40124603 tatttagggttaaatatatttttggtccctacattttacgcgattttgagaataatc 40124547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 482 - 533
Target Start/End: Original strand, 32266478 - 32266529
Alignment:
Q  482 tttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32266478 tttagggttaaatatgtttttggtccctacattttacgcgattttgagaata 32266529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 482 - 533
Target Start/End: Original strand, 9122680 - 9122731
Alignment:
Q  482 tttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  9122680 tttagggttaaatatgtttttggtccccacattttacgcgattttgagaata 9122731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 490 - 533
Target Start/End: Complemental strand, 47410940 - 47410897
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  47410940 taaatatgtttttggtccctacattttacgcgattttgagaata 47410897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 483 - 533
Target Start/End: Original strand, 46802318 - 46802368
Alignment:
Q  483 ttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  46802318 ttagggttaaatatgtttttggtccccacattttacgcgattttgagaata 46802368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 17968035 - 17968083
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  17968035 agggttaaatatgtttttggtccctacattttgcgcgattttgagaata 17968083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 45230652 - 45230604
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  45230652 agggttaaatatgtttttggtccctacattttgcgcgattttgagaata 45230604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 533
Target Start/End: Complemental strand, 30428191 - 30428148
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  30428191 taaatatgtttttggtccctacattttgcgcgattttgagaata 30428148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 533
Target Start/End: Original strand, 47410417 - 47410469
Alignment:
Q  481 atttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||||||| ||||||||||||||||||||| |||||| || ||||||||||||    
T  47410417 atttagggttaaatatgtttttggtccctatattttatgcaattttgagaata 47410469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 490 - 533
Target Start/End: Complemental strand, 9123202 - 9123159
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||||||||||||||||||||||||||| || ||||||||||||    
T  9123202 taaatatgtttttggtccctacattttatgcaattttgagaata 9123159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 477 - 532
Target Start/End: Original strand, 30427663 - 30427718
Alignment:
Q  477 ttttatttagggataaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    |||| ||||||| |||||||||||||||||||||| |||| | |||||||||||||    
T  30427663 ttttttttagggttaaatatgtttttggtccctacgttttgcacgattttgagaat 30427718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 533
Target Start/End: Original strand, 40124072 - 40124122
Alignment:
Q  483 ttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||||| |||||||||||||||||| ||||||||||  |||||||||||||    
T  40124072 ttagggttaaatatgtttttggtccttacattttacttgattttgagaata 40124122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 533
Target Start/End: Complemental strand, 37717900 - 37717839
Alignment:
Q  472 tgtcattttatttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||| |||| || ||||||||||||| ||||||||||||||||| | ||||| ||||    
T  37717900 tgtcattttttttaaggttaaatatgtttttagtccctacattttacgcaactttgaaaata 37717839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 519
Target Start/End: Complemental strand, 4288353 - 4288324
Alignment:
Q  490 taaatatgtttttggtccctacattttacg 519  Q
    ||||||||||||||||||||||||||||||    
T  4288353 taaatatgtttttggtccctacattttacg 4288324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 532
Target Start/End: Complemental strand, 17968562 - 17968513
Alignment:
Q  483 ttagggataaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    |||||| |||||||||||||||||| ||| |||| | |||||||||||||    
T  17968562 ttagggttaaatatgtttttggtccatacgttttgcacgattttgagaat 17968513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 517
Target Start/End: Complemental strand, 46802844 - 46802812
Alignment:
Q  485 agggataaatatgtttttggtccctacatttta 517  Q
    |||| ||||||||||||||||||||||||||||    
T  46802844 agggttaaatatgtttttggtccctacatttta 46802812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 481 - 533
Target Start/End: Original strand, 14257141 - 14257193
Alignment:
Q  481 atttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14257141 atttagggttaaatatgtttttggtccctacattttacgcgattttgagaata 14257193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 485 - 536
Target Start/End: Complemental strand, 20824686 - 20824635
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaataatc 536  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20824686 agggttaaatatgtttttggtccctacattttacgcgattttgagaataatc 20824635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 485 - 536
Target Start/End: Original strand, 15147716 - 15147767
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaataatc 536  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  15147716 agggttaaatatgtttttggtccctacattttacgcgatttagagaataatc 15147767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 33107452 - 33107404
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  33107452 agggttaaatatgtttttggtccctacattttgcgcgattttgagaata 33107404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 34984635 - 34984587
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  34984635 agggttaaatatgtttttggtccctacattttgcgcgattttgagaata 34984587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 533
Target Start/End: Complemental strand, 6162774 - 6162731
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  6162774 taaatatgtttttggtccctacattttgcgcgattttgagaata 6162731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 20824167 - 20824210
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  20824167 taaatatgtttttggtccctacattttacacgattttgagaata 20824210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 533
Target Start/End: Complemental strand, 15148243 - 15148192
Alignment:
Q  482 tttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||    
T  15148243 tttagggttaaatatgtttttggtccctatattttacgcaattttgataata 15148192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 14257669 - 14257621
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||| |||||| || ||||||||||||    
T  14257669 agggttaaatatgtttttggtccctatattttatgcaattttgagaata 14257621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 33106918 - 33106974
Alignment:
Q  476 attttatttagggataaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    ||||||| ||||  |||||||||||||||||||||| |||| | |||||||||||||    
T  33106918 attttatataggattaaatatgtttttggtccctacgttttgcacgattttgagaat 33106974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 510
Target Start/End: Original strand, 1336525 - 1336558
Alignment:
Q  477 ttttatttagggataaatatgtttttggtcccta 510  Q
    |||||||||||| |||||||||||||||||||||    
T  1336525 ttttatttagggttaaatatgtttttggtcccta 1336558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 485 - 536
Target Start/End: Original strand, 5746759 - 5746810
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaataatc 536  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5746759 agggttaaatatgtttttggtccctacattttacgcgattttgagaataatc 5746810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 485 - 536
Target Start/End: Original strand, 28641159 - 28641210
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaataatc 536  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28641159 agggttaaatatgtttttggtccctacattttacgcgattttgagaataatc 28641210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 479 - 533
Target Start/End: Original strand, 31162413 - 31162467
Alignment:
Q  479 ttatttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  31162413 ttatttagggttaaatatgtttttggtccctacattttacgtgattttgagaata 31162467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 490 - 536
Target Start/End: Complemental strand, 31162938 - 31162892
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaataatc 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31162938 taaatatgtttttggtccctacattttacgcgattttgagaataatc 31162892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 5747283 - 5747235
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5747283 agggttaaatatgtttttggtccctacattttacgcgattttgagaata 5747235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 6543413 - 6543461
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6543413 agggttaaatatgtttttggtccctacattttacgcgattttgagaata 6543461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 473 - 533
Target Start/End: Complemental strand, 39402748 - 39402688
Alignment:
Q  473 gtcattttatttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||| |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  39402748 gtcatttgattttgggttaaatatgtttttggtccctacattttacacgattttgagaata 39402688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 21949403 - 21949446
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  21949403 taaatatgtttttggtccctacattttacgcgattttgagaata 21949446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 39402210 - 39402258
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  39402210 agggttaaatatgtttttggtccctacattttgcgcgattttgagaata 39402258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 485 - 536
Target Start/End: Complemental strand, 6543936 - 6543886
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaataatc 536  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  6543936 agggttaaatatgtttttggtcc-tacattttacgcgattttgagaataatc 6543886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 533
Target Start/End: Complemental strand, 28641678 - 28641635
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  28641678 taaatatgtgtttggtccctacattttacgcgattttgagaata 28641635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 490 - 536
Target Start/End: Complemental strand, 3879290 - 3879244
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaataatc 536  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  3879290 taaatatatttttggtccctacattttgcgcgattttgagaataatc 3879244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 31093518 - 31093470
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| ||||    
T  31093518 agggttaaatatgtttttggtccctacattttgcgcgattttgaaaata 31093470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 494 - 533
Target Start/End: Complemental strand, 21949913 - 21949874
Alignment:
Q  494 tatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  21949913 tatgtttttggtccctacattttacgcgattttaagaata 21949874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 485 - 526
Target Start/End: Original strand, 14625120 - 14625161
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgatttt 526  Q
    |||| ||||||||||||||||||||||||||||||| |||||    
T  14625120 agggttaaatatgtttttggtccctacattttacgcaatttt 14625161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 3192322 - 3192274
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||| |||||  |||||||||||||||    
T  3192322 agggttaaatatgtttttggtccctatattttgtgcgattttgagaata 3192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 3191801 - 3191844
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||| ||||||||||||| | ||||||||||||||    
T  3191801 taaatatgtttttagtccctacattttgcacgattttgagaata 3191844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 532
Target Start/End: Original strand, 3878770 - 3878817
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    |||| |||||||||||||||||||||| |||| | |||||||||||||    
T  3878770 agggttaaatatgtttttggtccctacgttttgcacgattttgagaat 3878817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 87183 - 87149
Alignment:
Q  482 tttagggataaatatgtttttggtccctacatttt 516  Q
    ||||||| |||||||||||||||||||||||||||    
T  87183 tttagggttaaatatgtttttggtccctacatttt 87149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Original strand, 119005 - 119039
Alignment:
Q  482 tttagggataaatatgtttttggtccctacatttt 516  Q
    ||||||| |||||||||||||||||||||||||||    
T  119005 tttagggttaaatatgtttttggtccctacatttt 119039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Original strand, 35373616 - 35373650
Alignment:
Q  482 tttagggataaatatgtttttggtccctacatttt 516  Q
    ||||||| |||||||||||||||||||||||||||    
T  35373616 tttagggttaaatatgtttttggtccctacatttt 35373650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 516
Target Start/End: Complemental strand, 120051 - 120019
Alignment:
Q  484 tagggataaatatgtttttggtccctacatttt 516  Q
    ||||| |||||||||||||||||||||||||||    
T  120051 tagggttaaatatgtttttggtccctacatttt 120019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 532
Target Start/End: Original strand, 31092992 - 31093040
Alignment:
Q  484 tagggataaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    ||||| ||||||||||||||||||| || |||| | |||||||||||||    
T  31092992 tagggttaaatatgtttttggtcccaacgttttgcacgattttgagaat 31093040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 485 - 536
Target Start/End: Original strand, 28957309 - 28957360
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaataatc 536  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28957309 agggttaaatatgtttttggtccctacattttacgcgattttgagaataatc 28957360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 490 - 536
Target Start/End: Original strand, 31227882 - 31227928
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaataatc 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31227882 taaatatgtttttggtccctacattttacgcgattttgagaataatc 31227928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 490 - 535
Target Start/End: Original strand, 12107709 - 12107754
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaataat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12107709 taaatatgtttttggtccctacattttacgcgattttgagaataat 12107754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 28957841 - 28957785
Alignment:
Q  477 ttttatttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28957841 tttttttttgggttaaatatgtttttggtccctacattttacgcgattttgagaata 28957785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 490 - 533
Target Start/End: Complemental strand, 2669524 - 2669481
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2669524 taaatatgtttttggtccctacattttacgcgattttgagaata 2669481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 483 - 533
Target Start/End: Complemental strand, 30546239 - 30546189
Alignment:
Q  483 ttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  30546239 ttagggttaaatatgtttttggtccctacattttgcgcgattttgagaata 30546189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 476 - 533
Target Start/End: Original strand, 12922631 - 12922688
Alignment:
Q  476 attttatttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  12922631 attttattttgggttaaatatgtttttggtccctacattttgcgcaattttgagaata 12922688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 38026206 - 38026150
Alignment:
Q  477 ttttatttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||| |||||||||||||||| |||||||||||||| ||||||||||||    
T  38026206 ttttttttagggttaaatatgtttttggttcctacattttacgcaattttgagaata 38026150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 43980080 - 43980032
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  43980080 agggttaaatatgtttttggtccctacattttgcgcgattttgagaata 43980032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 533
Target Start/End: Complemental strand, 31228396 - 31228353
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  31228396 taaatatgtttttgatccctacattttacgcgattttgagaata 31228353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 40841465 - 40841508
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  40841465 taaatatgtttttggtccctacattttacgcgattttaagaata 40841508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 484 - 533
Target Start/End: Complemental strand, 40841985 - 40841936
Alignment:
Q  484 tagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||| ||| ||||||||||||||||||||||||||||||||| ||||||    
T  40841985 tagggttaattatgtttttggtccctacattttacgcgattttaagaata 40841936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 533
Target Start/End: Original strand, 789890 - 789941
Alignment:
Q  482 tttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||    
T  789890 tttagggttaaatatgtttttggtccctacattttgcgcaattttgaaaata 789941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 28505212 - 28505255
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  28505212 taaatatgtttttggtccctacattttgcacgattttgagaata 28505255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 38025679 - 38025722
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||    
T  38025679 taaatatgtctttggtccctacattttacgcaattttgagaata 38025722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 55347564 - 55347607
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||    
T  55347564 taaatatatttttggtccctacattttacgcaattttgagaata 55347607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 1317583 - 1317535
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| |||||||||||||||| |||||||||| ||||||||||| ||||    
T  1317583 agggttaaatatgtttttggttcctacattttgcgcgattttgaaaata 1317535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 21235031 - 21235074
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||    
T  21235031 taaatatgtttttggtccctacattttgcacgattttgataata 21235074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 532
Target Start/End: Original strand, 30545711 - 30545758
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    |||| |||||||||||||||||||||| |||| | |||||||||||||    
T  30545711 agggttaaatatgtttttggtccctacgttttgcacgattttgagaat 30545758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 46262638 - 46262681
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||||||||| ||| ||||||| ||||    
T  46262638 taaatatgtttttggtccctacattttgcgcaattttgaaaata 46262681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 533
Target Start/End: Complemental strand, 55348051 - 55348012
Alignment:
Q  494 tatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  55348051 tatgtttttggtcccaacattttacgcgattttaagaata 55348012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 1317063 - 1317105
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    |||||||||||||||||||||| |||| | |||||||||||||    
T  1317063 taaatatgtttttggtccctacgttttgcacgattttgagaat 1317105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Original strand, 5544952 - 5544986
Alignment:
Q  482 tttagggataaatatgtttttggtccctacatttt 516  Q
    ||||||| |||||||||||||||||||||||||||    
T  5544952 tttagggttaaatatgtttttggtccctacatttt 5544986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 26168314 - 26168280
Alignment:
Q  482 tttagggataaatatgtttttggtccctacatttt 516  Q
    ||||||| |||||||||||||||||||||||||||    
T  26168314 tttagggttaaatatgtttttggtccctacatttt 26168280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 46263153 - 46263111
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    |||||||||||||||||||||| |||| | |||||||||||||    
T  46263153 taaatatgtttttggtccctacgttttgcacgattttgagaat 46263111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 2669005 - 2669053
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| |||||||||||||||||| || |||||| || ||||||||||||    
T  2669005 agggttaaatatgtttttggtccttatattttatgcaattttgagaata 2669053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 532
Target Start/End: Complemental strand, 12923158 - 12923118
Alignment:
Q  492 aatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    |||||||||||||||||||||||||   |||||||||||||    
T  12923158 aatatgtttttggtccctacattttgtacgattttgagaat 12923118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 43979546 - 43979602
Alignment:
Q  476 attttatttagggataaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    ||||| ||| ||| |||||||||||||||||||||  |||| | |||||||||||||    
T  43979546 atttttttttgggttaaatatgtttttggtccctatgttttgcacgattttgagaat 43979602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 485 - 536
Target Start/End: Original strand, 11450754 - 11450805
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaataatc 536  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11450754 agggttaaatatgtttttggtccctacattttacgcgattttgagaataatc 11450805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 483 - 533
Target Start/End: Original strand, 6476083 - 6476133
Alignment:
Q  483 ttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6476083 ttagggttaaatatgtttttggtccctacattttacgcgattttgagaata 6476133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 483 - 533
Target Start/End: Complemental strand, 6476611 - 6476561
Alignment:
Q  483 ttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6476611 ttagggttaaatatgtttttggtccctacattttacgcgattttgagaata 6476561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 490 - 536
Target Start/End: Complemental strand, 27378166 - 27378120
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaataatc 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27378166 taaatatgtttttggtccctacattttacgcgattttgagaataatc 27378120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 484 - 533
Target Start/End: Original strand, 27377646 - 27377695
Alignment:
Q  484 tagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27377646 tagggttaaatatgtttttggtccctacattttacgcgattttgagaata 27377695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 1804230 - 1804278
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1804230 agggttaaatatgtttttggtccctacattttacgcgattttgagaata 1804278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 1804754 - 1804706
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1804754 agggttaaatatgtttttggtccctacattttacgcgattttgagaata 1804706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 11451278 - 11451230
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11451278 agggttaaatatgtttttggtccctacattttacgcgattttgagaata 11451230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 22704476 - 22704428
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  22704476 agggttaaatatgtttttggtccctacattttgcgcgattttgagaata 22704428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 484 - 536
Target Start/End: Complemental strand, 39097049 - 39096997
Alignment:
Q  484 tagggataaatatgtttttggtccctacattttacgcgattttgagaataatc 536  Q
    ||||| ||||||||||||||||||||||||||| | |||||||||||||||||    
T  39097049 tagggttaaatatgtttttggtccctacattttgcacgattttgagaataatc 39096997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 533
Target Start/End: Complemental strand, 3854584 - 3854541
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  3854584 taaatatgtttttggtccctacattttgcgcgattttgagaata 3854541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 12090217 - 12090169
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| |||||||||||||||||||| |||||| ||||||||||||||||    
T  12090217 agggttaaatatgtttttggtccctgcattttgcgcgattttgagaata 12090169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 490 - 533
Target Start/End: Complemental strand, 26525981 - 26525938
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||    
T  26525981 taaatatgtttttggtccctacattttgcgcgattttgataata 26525938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 477 - 518
Target Start/End: Complemental strand, 10711102 - 10711061
Alignment:
Q  477 ttttatttagggataaatatgtttttggtccctacattttac 518  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  10711102 ttttatttagggttaaatatgtttttggtccctatattttac 10711061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 39096527 - 39096570
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||| |||||  |||||||||||||||    
T  39096527 taaatatgtttttggtccctatattttgtgcgattttgagaata 39096570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 3854069 - 3854111
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    |||||||||||||||||||||| |||| | |||||||||||||    
T  3854069 taaatatgtttttggtccctacgttttgcacgattttgagaat 3854111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Original strand, 7083690 - 7083724
Alignment:
Q  482 tttagggataaatatgtttttggtccctacatttt 516  Q
    ||||||| |||||||||||||||||||||||||||    
T  7083690 tttagggttaaatatgtttttggtccctacatttt 7083724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 528
Target Start/End: Complemental strand, 24093478 - 24093432
Alignment:
Q  482 tttagggataaatatgtttttggtccctacattttacgcgattttga 528  Q
    ||||||| ||||||||||||| |||||||||||||||| || |||||    
T  24093478 tttagggttaaatatgtttttcgtccctacattttacgtgactttga 24093432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 516
Target Start/End: Complemental strand, 44934786 - 44934744
Alignment:
Q  474 tcattttatttagggataaatatgtttttggtccctacatttt 516  Q
    |||||| | |||||| |||||||||||||||||||||||||||    
T  44934786 tcatttaaattagggttaaatatgtttttggtccctacatttt 44934744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 532
Target Start/End: Original strand, 12089690 - 12089739
Alignment:
Q  483 ttagggataaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    |||||| |||||||||||||||||||||| |||| | | |||||||||||    
T  12089690 ttagggttaaatatgtttttggtccctacgttttgcacaattttgagaat 12089739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 510
Target Start/End: Complemental strand, 12851785 - 12851753
Alignment:
Q  478 tttatttagggataaatatgtttttggtcccta 510  Q
    ||||||||||| |||||||||||||||||||||    
T  12851785 tttatttagggttaaatatgtttttggtcccta 12851753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 530
Target Start/End: Original strand, 26525465 - 26525505
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgaga 530  Q
    |||||||||||||||||||||| |||| | |||||||||||    
T  26525465 taaatatgtttttggtccctacgttttgcacgattttgaga 26525505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 34037807 - 34037855
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| |||||| |||||||||| ||| ||||| ||||||||||||||||    
T  34037807 agggttaaatacgtttttggtctctatattttgcgcgattttgagaata 34037855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 38306012 - 38305972
Alignment:
Q  470 attgtcattttatttagggataaatatgtttttggtcccta 510  Q
    ||||| |||| |||||||| |||||||||||||||||||||    
T  38306012 attgtaatttaatttagggttaaatatgtttttggtcccta 38305972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 39943 - 39895
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39943 agggttaaatatgtttttggtccctacattttacgcgattttgagaata 39895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 485 - 536
Target Start/End: Original strand, 39419 - 39470
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaataatc 536  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  39419 agggttaaatatgtttttggtccctacattttatgcgattttgagaataatc 39470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 482 - 533
Target Start/End: Original strand, 28898024 - 28898075
Alignment:
Q  482 tttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  28898024 tttagggttaaatatgtttttggtccctacattttgcgcgattttgagaata 28898075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 1244534 - 1244486
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  1244534 agggttaaatatgtttttggtccctacattttgcgcgattttgagaata 1244486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 33847864 - 33847912
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  33847864 agggttaaatatgtttttggtccctatattttacgcgattttgagaata 33847912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 41298767 - 41298719
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  41298767 agggttaaatatgtttttggtccctacattttgcgcgattttgagaata 41298719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 484 - 533
Target Start/End: Complemental strand, 18443701 - 18443652
Alignment:
Q  484 tagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||||||    
T  18443701 tagggttaaatatgtttttggtccttacattttgcgcgattttgagaata 18443652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 18443179 - 18443222
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  18443179 taaatatgtttttggtccctacattttgcacgattttgagaata 18443222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 532
Target Start/End: Original strand, 41298238 - 41298289
Alignment:
Q  481 atttagggataaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    |||| ||| ||||||||||||||||||||||||||| | |||||||||||||    
T  41298238 attttgggttaaatatgtttttggtccctacattttgcacgattttgagaat 41298289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 29784470 - 29784422
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| |||||||||||||||||||||| |||| | ||||||||||||||    
T  29784470 agggttaaatatgtttttggtccctacgttttgcacgattttgagaata 29784422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 33848388 - 33848340
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| ||| |||||||||| |||||||||||||||||||||| ||||||    
T  33848388 agggttaattatgtttttgttccctacattttacgcgattttaagaata 33848340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 532
Target Start/End: Original strand, 884680 - 884727
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    |||| |||||||||||||||||||||| |||| | |||||||||||||    
T  884680 agggttaaatatgtttttggtccctacgttttgcacgattttgagaat 884727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 532
Target Start/End: Original strand, 1244009 - 1244056
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    |||| |||||||||||||||||||||| |||| | |||||||||||||    
T  1244009 agggttaaatatgtttttggtccctacgttttgcacgattttgagaat 1244056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 28898552 - 28898505
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    |||| |||||||||||||||||||||| |||| | |||||||||||||    
T  28898552 agggttaaatatgtttttggtccctacgttttgcacgattttgagaat 28898505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 29783938 - 29783981
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||||||||||| |||||||||||||  |||||||||||||||    
T  29783938 taaatatgtttttagtccctacattttgtgcgattttgagaata 29783981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 516
Target Start/End: Complemental strand, 12933159 - 12933122
Alignment:
Q  479 ttatttagggataaatatgtttttggtccctacatttt 516  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  12933159 ttatttagggttaaatatgtttttagtccctacatttt 12933122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 533
Target Start/End: Original strand, 22954043 - 22954092
Alignment:
Q  484 tagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||| ||||||||||||| ||||||| |||||| || ||||||||||||    
T  22954043 tagggttaaatatgtttttagtccctatattttatgcaattttgagaata 22954092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 525
Target Start/End: Complemental strand, 30939656 - 30939616
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattt 525  Q
    |||| ||||||||||||| ||||||||||||||||| ||||    
T  30939656 agggttaaatatgtttttagtccctacattttacgccattt 30939616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 483 - 533
Target Start/End: Original strand, 12734169 - 12734219
Alignment:
Q  483 ttagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  12734169 ttagggttaaatatgtttttggtccctacattttgcgcgattttgagaata 12734219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 484 - 533
Target Start/End: Complemental strand, 29917630 - 29917581
Alignment:
Q  484 tagggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||||||    
T  29917630 tagggttaaatatgtttttggtccctacattttgcacgattttgagaata 29917581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 29917103 - 29917151
Alignment:
Q  485 agggataaatatgtttttggtccctacattttacgcgattttgagaata 533  Q
    |||| |||||||||||||| ||||||| |||| ||||||||||||||||    
T  29917103 agggttaaatatgtttttgatccctacgttttgcgcgattttgagaata 29917151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 12734691 - 12734649
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttgagaat 532  Q
    |||||||||||||||||||||| |||| | |||||||||||||    
T  12734691 taaatatgtttttggtccctacgttttgcacgattttgagaat 12734649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 536
Target Start/End: Complemental strand, 108044 - 107989
Alignment:
Q  482 tttagggataaatatgtttttggtccctacattttacgcgattttg-agaataatc 536  Q
    ||||||| ||||||||||||||||||||||||||| || || |||| |||||||||    
T  108044 tttagggttaaatatgtttttggtccctacattttgcgtgactttgaagaataatc 107989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 528
Target Start/End: Original strand, 107898 - 107936
Alignment:
Q  490 taaatatgtttttggtccctacattttacgcgattttga 528  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  107898 taaatatgtttttggtccctacattttccgtgattttga 107936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 520
Target Start/End: Complemental strand, 25936 - 25899
Alignment:
Q  483 ttagggataaatatgtttttggtccctacattttacgc 520  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  25936 ttagggttaaatatgtttttagtccctacattttacgc 25899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 516
Target Start/End: Complemental strand, 33087 - 33055
Alignment:
Q  484 tagggataaatatgtttttggtccctacatttt 516  Q
    ||||| |||||||||||||||||||||||||||    
T  33087 tagggttaaatatgtttttggtccctacatttt 33055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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