View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8580_low_9 (Length: 515)
Name: NF8580_low_9
Description: NF8580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8580_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 6e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 277 - 500
Target Start/End: Original strand, 14568649 - 14568866
Alignment:
| Q |
277 |
acgacacagaaactgacacattgacaccaataataaatgattgagtgtaaccacatccacatgtgtcacgacactgaccatgtctttaatctaaagagtt |
376 |
Q |
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| T |
14568649 |
acgacacagaatctgacacgttgacaccaataataaatgattgagtgtaaccacat------gtttcccgacactggacatgtctttaatctaaagtatt |
14568742 |
T |
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| Q |
377 |
ggtgctacatgcagctagcagatgaccttggttgcattgtggttatagagacatcgaaaaccttgaatcacgacaaaaggaccatcttttaacaacctat |
476 |
Q |
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| T |
14568743 |
ggttctacatgcagctagcagatgaccttggttgcgttgtggtcatagagacattgaaaaccttgaatcgcggcaaaaggaccttcttttaacaacttat |
14568842 |
T |
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| Q |
477 |
gaaagtagatatacgagttgttac |
500 |
Q |
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| T |
14568843 |
caaagtagatatacgagttgttac |
14568866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 14568426 - 14568567
Alignment:
| Q |
7 |
tttggtggtgggaaattttggttgccaagtccatctgcaccatggacagagtccctaatgtcaagttttgtctctttctgtagaagtgaaacgagtgaaa |
106 |
Q |
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| T |
14568426 |
tttggtggtggaaaattttggttgccaagtccatctgcaccatggacagaatccctaatatgaagttttgtttctttctgtaaaagtgaaatgagtgaaa |
14568525 |
T |
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| Q |
107 |
ataattagtcaagtcaaatatcaagttatactacagatcaac |
148 |
Q |
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| T |
14568526 |
ataattagtcaagtcaaataccaagttatactacatatcaac |
14568567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 14576129 - 14576176
Alignment:
| Q |
7 |
tttggtggtgggaaattttggttgccaagtccatctgcaccatggaca |
54 |
Q |
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| T |
14576129 |
tttggtggtggaaaattttggttgccaagtccatctgcaccatggaca |
14576176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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