View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8581_high_11 (Length: 421)

Name: NF8581_high_11
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8581_high_11
NF8581_high_11
[»] chr2 (15 HSPs)
chr2 (2-254)||(36444868-36445119)
chr2 (277-402)||(34392127-34392251)
chr2 (270-384)||(10163501-10163615)
chr2 (301-400)||(7381695-7381794)
chr2 (277-389)||(23863849-23863958)
chr2 (307-402)||(21603960-21604055)
chr2 (286-398)||(14565908-14566019)
chr2 (299-402)||(37357988-37358091)
chr2 (270-334)||(3668048-3668112)
chr2 (275-360)||(41095830-41095914)
chr2 (277-402)||(4775635-4775760)
chr2 (295-353)||(4779635-4779692)
chr2 (341-410)||(37811084-37811153)
chr2 (336-406)||(3668320-3668390)
chr2 (285-352)||(25275676-25275741)
[»] chr5 (18 HSPs)
chr5 (270-408)||(38010652-38010790)
chr5 (270-408)||(13478083-13478221)
chr5 (270-408)||(29989957-29990095)
chr5 (270-408)||(13086748-13086886)
chr5 (270-402)||(13015382-13015514)
chr5 (272-408)||(13421050-13421186)
chr5 (276-359)||(37881185-37881268)
chr5 (285-403)||(33858592-33858709)
chr5 (277-402)||(1826260-1826384)
chr5 (285-402)||(11607588-11607704)
chr5 (301-402)||(19357330-19357431)
chr5 (297-402)||(9827789-9827894)
chr5 (285-402)||(39570097-39570213)
chr5 (270-383)||(10292893-10293004)
chr5 (277-387)||(33271630-33271739)
chr5 (285-348)||(42148201-42148263)
chr5 (341-408)||(35622811-35622878)
chr5 (357-408)||(35622939-35622990)
[»] chr3 (24 HSPs)
chr3 (270-408)||(47186170-47186308)
chr3 (270-409)||(31187108-31187247)
chr3 (270-409)||(42664667-42664806)
chr3 (270-407)||(34029329-34029466)
chr3 (290-403)||(50934500-50934613)
chr3 (285-402)||(44380255-44380371)
chr3 (281-402)||(47426351-47426471)
chr3 (277-404)||(33509679-33509805)
chr3 (350-411)||(21963073-21963134)
chr3 (277-390)||(37742738-37742850)
chr3 (278-351)||(6022998-6023071)
chr3 (295-395)||(35094554-35094655)
chr3 (335-401)||(32319468-32319534)
chr3 (307-401)||(39498744-39498838)
chr3 (337-402)||(10018671-10018736)
chr3 (341-408)||(53440541-53440608)
chr3 (337-402)||(10179868-10179933)
chr3 (285-360)||(17466316-17466390)
chr3 (341-408)||(42273329-42273396)
chr3 (355-402)||(43689404-43689451)
chr3 (357-408)||(46489652-46489703)
chr3 (341-408)||(46489764-46489831)
chr3 (337-402)||(10123211-10123276)
chr3 (357-409)||(34955067-34955119)
[»] chr4 (21 HSPs)
chr4 (270-408)||(52012773-52012911)
chr4 (270-402)||(9799401-9799533)
chr4 (270-409)||(47943152-47943292)
chr4 (277-403)||(33249420-33249545)
chr4 (277-402)||(12473705-12473829)
chr4 (277-402)||(12528114-12528238)
chr4 (277-394)||(21260803-21260919)
chr4 (310-380)||(46719953-46720023)
chr4 (277-402)||(22343338-22343462)
chr4 (285-402)||(35869625-35869741)
chr4 (286-402)||(51811915-51812030)
chr4 (309-402)||(52910126-52910219)
chr4 (306-402)||(49999662-49999758)
chr4 (326-402)||(55590483-55590559)
chr4 (317-403)||(34829168-34829254)
chr4 (270-318)||(46720200-46720249)
chr4 (341-410)||(54277631-54277700)
chr4 (357-408)||(28092740-28092791)
chr4 (341-408)||(28092852-28092919)
chr4 (344-399)||(49998486-49998541)
chr4 (279-337)||(33174581-33174636)
[»] chr1 (15 HSPs)
chr1 (270-408)||(8809678-8809816)
chr1 (270-402)||(35998253-35998385)
chr1 (277-402)||(29119370-29119494)
chr1 (277-402)||(32676137-32676261)
chr1 (277-402)||(2569038-2569161)
chr1 (342-407)||(18056134-18056199)
chr1 (270-396)||(35534413-35534535)
chr1 (310-402)||(25161310-25161402)
chr1 (306-402)||(6223052-6223148)
chr1 (285-390)||(8462141-8462245)
chr1 (363-402)||(16679829-16679868)
chr1 (350-402)||(46435571-46435623)
chr1 (311-366)||(3688917-3688972)
chr1 (321-399)||(7214500-7214578)
chr1 (357-402)||(5581281-5581326)
[»] chr6 (7 HSPs)
chr6 (270-408)||(34245562-34245700)
chr6 (270-402)||(11113557-11113684)
chr6 (277-403)||(1211890-1212015)
chr6 (295-402)||(5403940-5404046)
chr6 (282-398)||(32644888-32645002)
chr6 (338-402)||(11753168-11753232)
chr6 (341-408)||(31030087-31030154)
[»] chr8 (8 HSPs)
chr8 (270-408)||(1514798-1514936)
chr8 (285-396)||(18168392-18168503)
chr8 (285-396)||(18631949-18632060)
chr8 (277-402)||(41179609-41179733)
chr8 (277-402)||(24337876-24338000)
chr8 (277-395)||(4708353-4708470)
chr8 (285-402)||(11254082-11254197)
chr8 (270-403)||(32825874-32826006)
[»] scaffold0032 (1 HSPs)
scaffold0032 (289-402)||(34195-34306)
[»] chr7 (5 HSPs)
chr7 (285-402)||(35341537-35341653)
chr7 (282-402)||(48250155-48250274)
chr7 (277-402)||(48072390-48072512)
chr7 (310-399)||(31306951-31307041)
chr7 (285-339)||(32694624-32694677)
[»] scaffold0229 (1 HSPs)
scaffold0229 (277-403)||(13051-13177)
[»] scaffold0263 (2 HSPs)
scaffold0263 (301-402)||(23168-23263)
scaffold0263 (357-402)||(23094-23139)
[»] scaffold0519 (1 HSPs)
scaffold0519 (285-402)||(11196-11311)
[»] scaffold0464 (1 HSPs)
scaffold0464 (341-402)||(6425-6486)
[»] scaffold0163 (1 HSPs)
scaffold0163 (363-408)||(28119-28164)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 36444868 - 36445119
Alignment:
Q  2 tcaatgagatggacatcagggctattagacaaaattcaagaactacaataaataaagataaaggtgtaaaacgaattataatagatgatactcttcatca 101  Q
    ||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36444868 tcaatgagtgggagatcagggctattagacaaaattcaagaactacaataaataaagataaaggtgtaaaacgaattataatagatgatactcttcatca 36444967  T
Q  102 tataaactagttccaatttgtccatataattaagtttggattgattcaagtgacatgcagactacctaccttgtttagagtcccgtaacgtgagtgnnnn 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||        
T  36444968 tataaactagttccaatttgtccatataattaagtttggattgattcaagtgacatgcagactacctaccttgtttagagtcccgtaatgtgagtg-aaa 36445066  T
Q  202 nnntatagacgatgaattggtccactcgtgtctaaacaaggtccaatattgtg 254  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36445067 aaatatagacgatgaattggtccactcgtgtctaaacaaggtccaatattgtg 36445119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 277 - 402
Target Start/End: Original strand, 34392127 - 34392251
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||| ||||  |||||| |    
T  34392127 tgtgccatgtggcacaccctttaaaaaa-atatatcaaataaagcatttataaagtaagattggtaggtggcacactctaattggccaatggtatatacc 34392225  T
Q  377 attggtaccttaatggtacacaagtg 402  Q
    |||||||||| |||||||||||||||    
T  34392226 attggtacctcaatggtacacaagtg 34392251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 270 - 384
Target Start/End: Complemental strand, 10163615 - 10163501
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||  |||||||||||| | |||||||||||| ||    
T  10163615 attaaggtatgccatgtagcacatactttaaaaaacatatatcaaataaattatttataaagtaatatcagtatgtggcacatttttattggtcaatgtt 10163516  T
Q  370 atataacattggtac 384  Q
    |||||||||||||||    
T  10163515 atataacattggtac 10163501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 301 - 400
Target Start/End: Complemental strand, 7381794 - 7381695
Alignment:
Q  301 aaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaag 400  Q
    |||| ||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||| ||||| |||||| |||||||||||||||||||||||||    
T  7381794 aaaaaatatatcaaataaagaatttataaagtaacattggtagatggcacactctaattggccaatagtatataccattggtaccttaatggtacacaag 7381695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 389
Target Start/End: Original strand, 23863849 - 23863958
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    ||||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||  |||||  ||||| |    
T  23863849 tgtgccatgtggcacaccctttaaaaat-atatatcaaataaagcatttataaagtaacattggtaggtggcacactctaattgaccaata--atatacc 23863945  T
Q  377 attggtaccttaa 389  Q
    |||||||||||||    
T  23863946 attggtaccttaa 23863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 307 - 402
Target Start/End: Complemental strand, 21604055 - 21603960
Alignment:
Q  307 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 402  Q
    |||||||||||||  ||||||||||||||||||||| |||  ||||| | ||||||||||  |||||| |||||||||||||||||||||||||||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtg 21603960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 398
Target Start/End: Original strand, 14565908 - 14566019
Alignment:
Q  286 tggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtacc 385  Q
    |||||||  ||||||||||| |||||||||| ||||| ||||||| ||| |||||||||| |||||||||  ||| |||||  |||||||||||||||||    
T  14565908 tggcacatcctttaaaaaac-tatatcaaatgaagtacttataaaataatattggtatgtagcacactctacttgatcaatgatatataacattggtacc 14566006  T
Q  386 ttaatggtacaca 398  Q
    ||| |||||||||    
T  14566007 ttagtggtacaca 14566019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 402
Target Start/End: Original strand, 37357988 - 37358091
Alignment:
Q  299 aaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacaca 398  Q
    |||||| | |||| |||||||| |||||||||||||||||| || ||| |||||||| ||| ||||||  |||||| |||||||||||||||| ||||||    
T  37357988 aaaaaaaaaatattaaataaagcatttataaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacaca 37358087  T
Q  399 agtg 402  Q
    ||||    
T  37358088 agtg 37358091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 3668048 - 3668112
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaa 334  Q
    |||||| ||||||||||||||| ||||||||||||||||||| |||||||| | |||||||||||    
T  3668048 attaagatgtgccatgtggcactcactttaaaaaacatatataaaataaagcacttataaagtaa 3668112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 360
Target Start/End: Original strand, 41095830 - 41095914
Alignment:
Q  275 ggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattg 360  Q
    |||||||||||||||| ||  ||||||||| || |||||||||||| ||||||||||||||||||||| ||||  |||||| ||||    
T  41095830 ggtgtgccatgtggcataccttttaaaaaa-atctatcaaataaagcatttataaagtaacattggtaggtggtgcactctaattg 41095914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 402
Target Start/End: Complemental strand, 4775760 - 4775635
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtattta-taaagtaacattggtatgtggcacactcttattggtcaatattatataa 375  Q
    ||||||||||||||||  |||||||||| |||||| |||||||  | ||| |||||||| |||||||  ||  ||| ||| ||||| ||||| ||||||     
T  4775760 tgtgccatgtggcacatcctttaaaaaa-atatattaaataaaacaattaataaagtaagattggtagatgagacattctaattggccaataatatatat 4775662  T
Q  376 cattggtaccttaatggtacacaagtg 402  Q
    |||||||| |||||||||||| |||||    
T  4775661 cattggtagcttaatggtacataagtg 4775635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 4779692 - 4779635
Alignment:
Q  295 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacact 353  Q
    |||||||||| |||||||||||||||||||||||||||||||||| || | ||||||||    
T  4779692 ctttaaaaaa-atatatcaaataaagtatttataaagtaacattgttaggcggcacact 4779635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 341 - 410
Target Start/End: Complemental strand, 37811153 - 37811084
Alignment:
Q  341 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtccat 410  Q
    ||||||||||||| | ||||| |||| |||||||||||||||| |  ||||||||||||||| |||||||    
T  37811153 tatgtggcacactttcattggccaatgttatataacattggtatcccaatggtacacaagtggtgtccat 37811084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 406
Target Start/End: Original strand, 3668320 - 3668390
Alignment:
Q  336 attggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgt 406  Q
    |||| |||||| ||||||||||    ||||| |||||||||||||||||||||||| ||||||| ||||||    
T  3668320 attgatatgtgacacactcttaccaatcaatgttatataacattggtaccttaatgatacacaaatgatgt 3668390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 25275676 - 25275741
Alignment:
Q  285 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacac 352  Q
    ||||||||  ||||||||||  |||||||||||||||||||| |||||||||||| || |||||||||    
T  25275676 gtggcacatcctttaaaaaag-tatatcaaataaagtattta-aaagtaacattgataggtggcacac 25275741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 270 - 408
Target Start/End: Original strand, 38010652 - 38010790
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  38010652 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgtt 38010751  T
Q  370 atataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  38010752 atataacattggtaccttaatggtacacaagtggtgtcc 38010790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 270 - 408
Target Start/End: Original strand, 13478083 - 13478221
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  13478083 attaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaatatttataaagtaacaatggtatgtggcacactcttattggtcaatgtt 13478182  T
Q  370 atataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  13478183 atataacattggttccttaatggtacacaagtggtgtcc 13478221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 270 - 408
Target Start/End: Complemental strand, 29990095 - 29989957
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29990095 attaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgtt 29989996  T
Q  370 atataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  29989995 atataacattgataccttaatggtacacaagtggtgtcc 29989957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 270 - 408
Target Start/End: Complemental strand, 13086886 - 13086748
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    ||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  13086886 attaaggtgtgacatgtggcacacactttaaaaaatacatatcaaataaaatatttataaaataacattggtatgtggcacactcttattggtcaatgtt 13086787  T
Q  370 atataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  13086786 atataacattggtaccttaatggtacacaagtggtgtcc 13086748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 270 - 402
Target Start/End: Complemental strand, 13015514 - 13015382
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    |||||| |||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13015514 attaagatgtgacatgtggcacatactttaaaaaatatatatcaaataaaatatttataaagtaacattggtatgtggcacactcttattggtcaatgtt 13015415  T
Q  370 atataacattggtaccttaatggtacacaagtg 402  Q
    |||||||||||||||||||||||||||||||||    
T  13015414 atataacattggtaccttaatggtacacaagtg 13015382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 272 - 408
Target Start/End: Original strand, 13421050 - 13421186
Alignment:
Q  272 taaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattat 371  Q
    ||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| ||| ||  |||||||||||| ||||| ||||    
T  13421050 taaggtgtgtcatgtggcatacactttaaaaaacatatattaaataaagcatttataaagtaacattgatatttgatacactcttattgatcaatgttat 13421149  T
Q  372 ataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    ||||||||| |||||||||||||||||||||||||||    
T  13421150 ataacattgataccttaatggtacacaagtgatgtcc 13421186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 276 - 359
Target Start/End: Complemental strand, 37881268 - 37881185
Alignment:
Q  276 gtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttatt 359  Q
    |||| |||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37881268 gtgtaccatgtggcacacattttgaaaaacatatatcaaataaaatatttataaagtaacattggtatgtggcacactcttatt 37881185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 285 - 403
Target Start/End: Original strand, 33858592 - 33858709
Alignment:
Q  285 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 384  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| |||||||||| | ||||||||||  ||||||  ||||||||    
T  33858592 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatgatatatactattggtac 33858690  T
Q  385 cttaatggtacacaagtga 403  Q
    |||||||||||||| ||||    
T  33858691 cttaatggtacacaggtga 33858709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 402
Target Start/End: Complemental strand, 1826384 - 1826260
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| || || ||||||| ||||||| ||| |||||||| ||||  ||||  |||||| |    
T  1826384 tgtgccatgtggcacatactttaaaaaa-atatatcaaataaagcatctacaaagtaatattggtaggtgacacactctaattgaccaatggtatatacc 1826286  T
Q  377 attggtaccttaatggtacacaagtg 402  Q
    |||||||| |||||||||||||||||    
T  1826285 attggtactttaatggtacacaagtg 1826260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 285 - 402
Target Start/End: Original strand, 11607588 - 11607704
Alignment:
Q  285 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 384  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||| ||||||| |||||||||| | ||||||||||  |||||| |||||||||    
T  11607588 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattggtaggtggcacactataattggtcaatggtatataccattggtac 11607686  T
Q  385 cttaatggtacacaagtg 402  Q
    |||||||||| |||||||    
T  11607687 cttaatggtatacaagtg 11607704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 301 - 402
Target Start/End: Original strand, 19357330 - 19357431
Alignment:
Q  301 aaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaag 400  Q
    |||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||| ||||  |||||| |||||||||| ||||||||||||||    
T  19357330 aaaaaatatatcaaataaagcatttataaagtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaag 19357429  T
Q  401 tg 402  Q
    ||    
T  19357430 tg 19357431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 297 - 402
Target Start/End: Complemental strand, 9827894 - 9827789
Alignment:
Q  297 ttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtaca 396  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||| |||| ||||||| ||||   ||   |||||| |||||||||||||||||||||    
T  9827894 ttaaaaaagatatatcaaataaaatatttataaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtaca 9827795  T
Q  397 caagtg 402  Q
    ||||||    
T  9827794 caagtg 9827789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 285 - 402
Target Start/End: Original strand, 39570097 - 39570213
Alignment:
Q  285 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 384  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| ||| |||||||| ||||| ||||  |||||| ||||| |||    
T  39570097 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatggtatataccattgatac 39570195  T
Q  385 cttaatggtacacaagtg 402  Q
     |||||| ||||||||||    
T  39570196 tttaatgatacacaagtg 39570213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 383
Target Start/End: Complemental strand, 10293004 - 10292893
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    |||||||||||||| ||||||||| |||||||||| ||||  ||||||||  | ||| ||| ||||||| ||| |||||||| ||||||||| |||| ||    
T  10293004 attaaggtgtgccacgtggcacaccctttaaaaaaaatat--caaataaaacacttacaaaataacattagtacgtggcacattcttattggccaatgtt 10292907  T
Q  370 atataacattggta 383  Q
    ||||||||||||||    
T  10292906 atataacattggta 10292893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 387
Target Start/End: Complemental strand, 33271739 - 33271630
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    ||||||| ||||| ||  |||||||||| ||||||||||||||| |||||| ||||||||||| ||  || |||||||| ||||| ||||  |||||| |    
T  33271739 tgtgccacgtggcgcatcctttaaaaaa-atatatcaaataaagcatttatcaagtaacattgatagatgacacactctaattggccaatgatatatatc 33271641  T
Q  377 attggtacctt 387  Q
    |||||||||||    
T  33271640 attggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 348
Target Start/End: Complemental strand, 42148263 - 42148201
Alignment:
Q  285 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggc 348  Q
    |||| |||| |||||||||| ||||||||||||||  ||||||||||||||||||||| |||||    
T  42148263 gtggtacaccctttaaaaaa-atatatcaaataaaacatttataaagtaacattggtaggtggc 42148201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 408
Target Start/End: Complemental strand, 35622878 - 35622811
Alignment:
Q  341 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    ||||||||||||| | ||||  |||| |||||||||||||||| |  ||||||||||||||| |||||    
T  35622878 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 35622811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 35622939 - 35622990
Alignment:
Q  357 attggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    |||||||||| |||||||||||||||| |  ||||||||||||||| |||||    
T  35622939 attggtcaatgttatataacattggtatcccaatggtacacaagtggtgtcc 35622990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 270 - 408
Target Start/End: Complemental strand, 47186308 - 47186170
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  47186308 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgtt 47186209  T
Q  370 atataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  47186208 atataacattggtaccttaatggtacacaagtggtgtcc 47186170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 270 - 409
Target Start/End: Original strand, 31187108 - 31187247
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31187108 attaaggtgtgacatgtggcacacactttaaaaaatatatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgtt 31187207  T
Q  370 atataacattggtaccttaatggtacacaagtgatgtcca 409  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  31187208 atataacattggtaccttaatggtacataagtggtgtcca 31187247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 270 - 409
Target Start/End: Complemental strand, 42664806 - 42664667
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  42664806 attaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaaataacattggtatgtggcacactcttattggtcaatgtt 42664707  T
Q  370 atataacattggtaccttaatggtacacaagtgatgtcca 409  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  42664706 atataactttggtaccttaatggtacacaagtggtgtcca 42664667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 270 - 407
Target Start/End: Original strand, 34029329 - 34029466
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    |||||||||||  ||||| |||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||| ||||| ||    
T  34029329 attaaggtgtgatatgtgacacacactttaaaaaacatatatcaaataaaacatttataaagtaacattagtatgtggcacactcttattgatcaatgtt 34029428  T
Q  370 atataacattggtaccttaatggtacacaagtgatgtc 407  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  34029429 atataacattggtaccttaatggtaaacaagtggtgtc 34029466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 290 - 403
Target Start/End: Complemental strand, 50934613 - 50934500
Alignment:
Q  290 acacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaa 389  Q
    |||| ||||||| || ||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||| ||||  |||||| ||||||||||||||    
T  50934613 acaccctttaaataaaatatatcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaa 50934514  T
Q  390 tggtacacaagtga 403  Q
    ||||||||||||||    
T  50934513 tggtacacaagtga 50934500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 285 - 402
Target Start/End: Complemental strand, 44380371 - 44380255
Alignment:
Q  285 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 384  Q
    ||||||||| ||||||||||  |||||||||||||| ||||||||||||| |||| || ||| |||||| | ||||||||||| |||||| |||||||||    
T  44380371 gtggcacaccctttaaaaaag-tatatcaaataaagcatttataaagtaatattgataggtgacacactataattggtcaatagtatataccattggtac 44380273  T
Q  385 cttaatggtacacaagtg 402  Q
    ||||||||||||||||||    
T  44380272 cttaatggtacacaagtg 44380255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 281 - 402
Target Start/End: Complemental strand, 47426471 - 47426351
Alignment:
Q  281 ccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattg 380  Q
    ||||||||||||| |||||||||| ||||||||||||||| || ||||||||||||||| || ||| |||||||| ||||| ||||  ||||||  ||||    
T  47426471 ccatgtggcacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattgataggtgacacactctaattggccaatggtatatactattg 47426373  T
Q  381 gtaccttaatggtacacaagtg 402  Q
    ||||||||||||||||||||||    
T  47426372 gtaccttaatggtacacaagtg 47426351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 277 - 404
Target Start/End: Complemental strand, 33509805 - 33509679
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    ||||||||||||||||  |||||||||| ||| ||||||||||| || |||||||||| ||||||| |||||||||||| ||||||||||  ||||||      
T  33509805 tgtgccatgtggcacatcctttaaaaaa-atacatcaaataaagcatctataaagtaatattggtaggtggcacactctaattggtcaatgatatatact 33509707  T
Q  377 attggtaccttaatggtacacaagtgat 404  Q
    ||| ||||||||||||||||||| ||||    
T  33509706 attagtaccttaatggtacacaaatgat 33509679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 350 - 411
Target Start/End: Original strand, 21963073 - 21963134
Alignment:
Q  350 cactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtccatc 411  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||    
T  21963073 cactcttattggtcaatgttatataacattgataccttaatggtacataagtgatgtccatc 21963134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 390
Target Start/End: Complemental strand, 37742850 - 37742738
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||| |||  ||| |||||||||||| |||||| ||||| ||||  ||||  |||||| |    
T  37742850 tgtgccacgtggcacactctttaaaaaa-atatatcaaataaagcattggtaatgtaacattggtaggtggcatactctaattgaccaatgatatatacc 37742752  T
Q  377 attggtaccttaat 390  Q
    ||||||||||||||    
T  37742751 attggtaccttaat 37742738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 351
Target Start/End: Complemental strand, 6023071 - 6022998
Alignment:
Q  278 gtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcaca 351  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||| ||| ||| ||||||| ||||||||||||    
T  6023071 gtgccacgtggcacaccctttaaaaaatatatatcaaataaagtacttacaaaataacattagtatgtggcaca 6022998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 395
Target Start/End: Complemental strand, 35094655 - 35094554
Alignment:
Q  295 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactc--ttattggtcaatattatataacattggtaccttaatgg 392  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||||  | ||| ||||||  |||||| || |||||| |||||||    
T  35094655 ctttaaaaaa-atatatcaaataaaatatttataaagtaacattggtaggtggcatactctataattagtcaatggtatataccactggtactttaatgg 35094557  T
Q  393 tac 395  Q
    |||    
T  35094556 tac 35094554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 401
Target Start/End: Original strand, 32319468 - 32319534
Alignment:
Q  335 cattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagt 401  Q
    |||| ||| |||||||||||| ||||| ||||  |||||| ||||||||||||||||||||||||||    
T  32319468 catttgtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagt 32319534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 401
Target Start/End: Original strand, 39498744 - 39498838
Alignment:
Q  307 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagt 401  Q
    ||||| ||||||| |||||||||| |||||| | || ||| |||||| | ||||  ||||| |||||| ||||||||| ||||||||||||||||    
T  39498744 tatattaaataaaatatttataaaataacatcgataggtgacacactttaattgaccaataatatatatcattggtactttaatggtacacaagt 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 337 - 402
Target Start/End: Original strand, 10018671 - 10018736
Alignment:
Q  337 ttggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 402  Q
    |||||| |||||||||| ||||||  ||||  |||||||||||||||| |||||||||||||||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtg 10018736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 408
Target Start/End: Complemental strand, 53440608 - 53440541
Alignment:
Q  341 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    ||||||||||||| | |||||||| | |||||||||||||||| |  ||||||||||||||| |||||    
T  53440608 tatgtggcacactttcattggtcagtgttatataacattggtatcccaatggtacacaagtggtgtcc 53440541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 402
Target Start/End: Original strand, 10179868 - 10179933
Alignment:
Q  337 ttggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 402  Q
    |||||| |||||||||||| ||||  ||||  |||||| ||||||||| |||||||||||||||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtg 10179933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 360
Target Start/End: Complemental strand, 17466390 - 17466316
Alignment:
Q  285 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattg 360  Q
    |||||| || |||||||||| ||||||||| ||||  |||||||||||||||||| || ||| |||||||| ||||    
T  17466390 gtggcataccctttaaaaaa-atatatcaactaaatcatttataaagtaacattgataggtgacacactctaattg 17466316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 408
Target Start/End: Complemental strand, 42273396 - 42273329
Alignment:
Q  341 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    ||||||||||||| | ||||  |||| |||||||||||||||| |  ||||||||||||||| |||||    
T  42273396 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 42273329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 402
Target Start/End: Complemental strand, 43689451 - 43689404
Alignment:
Q  355 ttattggtcaatattatataacattggtaccttaatggtacacaagtg 402  Q
    |||||||||||| |||||||||||||||| |  |||||||||||||||    
T  43689451 ttattggtcaatgttatataacattggtatcacaatggtacacaagtg 43689404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 408
Target Start/End: Complemental strand, 46489703 - 46489652
Alignment:
Q  357 attggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    |||||||||| |||||||||||||||| |  ||||||||||||||| |||||    
T  46489703 attggtcaatgttatataacattggtatcccaatggtacacaagtggtgtcc 46489652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 408
Target Start/End: Original strand, 46489764 - 46489831
Alignment:
Q  341 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    ||||||||||||| | ||||  |||| |||||||||||||||| |  ||||||||||||||| |||||    
T  46489764 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 46489831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 402
Target Start/End: Original strand, 10123211 - 10123276
Alignment:
Q  337 ttggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 402  Q
    |||||| |||||||||| ||||||  || |  |||||||||||| ||| |||||||||||||||||    
T  10123211 ttggtaggtggcacacttttattgaccattgatatataacattgatactttaatggtacacaagtg 10123276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 34955119 - 34955067
Alignment:
Q  357 attggtcaatattatataacattggtaccttaatggtacacaagtgatgtcca 409  Q
    ||||| |||| |||||||||||||||| |  ||||||||||||||| ||||||    
T  34955119 attggccaatgttatataacattggtatcccaatggtacacaagtggtgtcca 34955067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 270 - 408
Target Start/End: Complemental strand, 52012911 - 52012773
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||| ||    
T  52012911 attaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtatgtggcacacttttattggtcaatgtt 52012812  T
Q  370 atataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  52012811 atataacattggtaccttaatggtacacaagtggtgtcc 52012773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 270 - 402
Target Start/End: Original strand, 9799401 - 9799533
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    ||||||||||| |||||| ||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||| |||| ||||||||| ||    
T  9799401 attaaggtgtgacatgtgacacacactttaaaaaacatatattaaataaaacatttataaagtaacattggtatgtggcacattcttgttggtcaatgtt 9799500  T
Q  370 atataacattggtaccttaatggtacacaagtg 402  Q
    ||||||||||||||||||||||||| |||||||    
T  9799501 atataacattggtaccttaatggtatacaagtg 9799533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 270 - 409
Target Start/End: Complemental strand, 47943292 - 47943152
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtc-aatat 368  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| | ||||||||| |||||    
T  47943292 attaaggtgtgacatgtggcacacattttaaaaaacatatatcaaataaaatatttataaaataatattggtatgtggcacatttttattggtcaaatat 47943193  T
Q  369 tatataacattggtaccttaatggtacacaagtgatgtcca 409  Q
    |||||||||||||||  ||||||||||||||||| ||||||    
T  47943192 tatataacattggtattttaatggtacacaagtggtgtcca 47943152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 277 - 403
Target Start/End: Original strand, 33249420 - 33249545
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    ||||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||| ||||  |||||| |    
T  33249420 tgtgccatgtggcacaccctttaaaaat-atatatcaaataaagcatttataaagtaacattggtaggtgacacactctaattggccaattgtatatacc 33249518  T
Q  377 attggtaccttaatggtacacaagtga 403  Q
    ||| |||||||||||||||||||||||    
T  33249519 atttgtaccttaatggtacacaagtga 33249545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 402
Target Start/End: Complemental strand, 12473829 - 12473705
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    |||| |||||| ||||| |||||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| ||||  |||||| |    
T  12473829 tgtgtcatgtgccacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatggtatatacc 12473731  T
Q  377 attggtaccttaatggtacacaagtg 402  Q
    |||||||||||||||||| |||||||    
T  12473730 attggtaccttaatggtatacaagtg 12473705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 402
Target Start/End: Complemental strand, 12528238 - 12528114
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    |||| |||||| ||||| |||||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| ||||  |||||| |    
T  12528238 tgtgtcatgtgccacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacattggtaggtggcacactctaattggccaatggtatatacc 12528140  T
Q  377 attggtaccttaatggtacacaagtg 402  Q
    |||||||||||||||||| |||||||    
T  12528139 attggtaccttaatggtatacaagtg 12528114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 394
Target Start/End: Complemental strand, 21260919 - 21260803
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    ||||||||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||||||| ||| |||||||| ||||| ||||  |||||| |    
T  21260919 tgtgccatgtggcacaccctttaaaaaa-atatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatgatatatatc 21260821  T
Q  377 attggtaccttaatggta 394  Q
    ||||||||||||||||||    
T  21260820 attggtaccttaatggta 21260803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 46720023 - 46719953
Alignment:
Q  310 atcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattg 380  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  46720023 atcaaataaagtatttataaagtaacatttgtatgtggcacactcttattggtcaatgttatataacattg 46719953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 402
Target Start/End: Complemental strand, 22343462 - 22343338
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    |||| |||||||||||  |||||||| | ||||||||||||||| |||||||||||||||||| ||  || |||||||| ||||||||||  |||||| |    
T  22343462 tgtgtcatgtggcacatcctttaaaata-atatatcaaataaagcatttataaagtaacattgatagatgacacactctaattggtcaatgatatatacc 22343364  T
Q  377 attggtaccttaatggtacacaagtg 402  Q
    |||| |||||||||||||||||||||    
T  22343363 attgataccttaatggtacacaagtg 22343338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 285 - 402
Target Start/End: Original strand, 35869625 - 35869741
Alignment:
Q  285 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 384  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||| ||||||||||||| |||||||| | | ||||||||||  |||||| |||||||||    
T  35869625 gtggcacaccctttaaaaaag-tatatcaaataaaacatttatatagtaacattggtaggtggcacattataattggtcaatggtatataccattggtac 35869723  T
Q  385 cttaatggtacacaagtg 402  Q
    ||||||||||||||||||    
T  35869724 cttaatggtacacaagtg 35869741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 286 - 402
Target Start/End: Complemental strand, 51812030 - 51811915
Alignment:
Q  286 tggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtacc 385  Q
    |||||||| |||||||||| |||||||||| |||  ||||||||||||||||||||| |||||| ||||| ||||| ||||| |||||| | ||| ||||    
T  51812030 tggcacaccctttaaaaaa-atatatcaaaaaaaaaatttataaagtaacattggtaggtggcatactctaattggccaataatatatatctttgatacc 51811932  T
Q  386 ttaatggtacacaagtg 402  Q
    |||||||||||| ||||    
T  51811931 ttaatggtacacgagtg 51811915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 309 - 402
Target Start/End: Original strand, 52910126 - 52910219
Alignment:
Q  309 tatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 402  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||| | ||||| ||||  ||||||||||||||||| | ||||||||||||||    
T  52910126 tatcaaataaagcatttataaagtaatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtg 52910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 402
Target Start/End: Original strand, 49999662 - 49999758
Alignment:
Q  306 atatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 402  Q
    ||||||||||||||| ||||||||| ||||||||||||||| |||||||| ||||  ||||   | |||||||| ||| ||| ||||||||||||||    
T  49999662 atatatcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacacaagtg 49999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 55590559 - 55590483
Alignment:
Q  326 ataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 402  Q
    ||||||||||||||||| ||| |||||| | |||| |||||  |||||| |||||||||||||||||||||||||||    
T  55590559 ataaagtaacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtg 55590483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 403
Target Start/End: Original strand, 34829168 - 34829254
Alignment:
Q  317 aaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtga 403  Q
    |||| ||||||||||||||||||||| ||| |||||| | ||||| || |  |||||| ||||||||||||||| ||||| ||||||    
T  34829168 aaagcatttataaagtaacattggtaggtgacacactttaattggccattgatatatatcattggtaccttaatagtacataagtga 34829254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 46720249 - 46720200
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaa-aaaacatatatcaaataa 318  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  46720249 attaaggtgtgtcatgtggcacacactttaaaaaaacatatatcaaataa 46720200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 410
Target Start/End: Original strand, 54277631 - 54277700
Alignment:
Q  341 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtccat 410  Q
    ||||||||||||| | ||||  |||| |||||||||||||||| |  ||||||||||||||| |||||||    
T  54277631 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtccat 54277700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 408
Target Start/End: Complemental strand, 28092791 - 28092740
Alignment:
Q  357 attggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    |||||||||| |||||||||||||||| |  ||||||||||||||| |||||    
T  28092791 attggtcaatgttatataacattggtatcccaatggtacacaagtggtgtcc 28092740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 408
Target Start/End: Original strand, 28092852 - 28092919
Alignment:
Q  341 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    ||||||||||||| | ||||  |||| |||||||||||||||| |  ||||||||||||||| |||||    
T  28092852 tatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 28092919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 49998541 - 49998486
Alignment:
Q  344 gtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaa 399  Q
    ||||||||| || ||||| ||||  ||||||| |||||||||||||||||||||||    
T  49998541 gtggcacaccctaattggccaatgatatataatattggtaccttaatggtacacaa 49998486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 33174636 - 33174581
Alignment:
Q  279 tgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacat 337  Q
    ||||| ||||||||| |||||||||   |||||||||||||  ||||||||||||||||    
T  33174636 tgccacgtggcacaccctttaaaaa---tatatcaaataaaacatttataaagtaacat 33174581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 270 - 408
Target Start/End: Original strand, 8809678 - 8809816
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  8809678 attaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggtacgtggcacactcttattggtcaatgtt 8809777  T
Q  370 atataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  8809778 atataacattggtaccttaatggtacacaagtggtgtcc 8809816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 270 - 402
Target Start/End: Complemental strand, 35998385 - 35998253
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||  | ||||||| |||||||| |||||||||||||||||||  ||||| ||    
T  35998385 attaagatgtgccatgtggcacacactttaaaaaacatatataaaataaaacacttataaaataacattgatatgtggcacactcttattaatcaatgtt 35998286  T
Q  370 atataacattggtaccttaatggtacacaagtg 402  Q
    ||||||||||||||||||||||||| |||||||    
T  35998285 atataacattggtaccttaatggtatacaagtg 35998253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 277 - 402
Target Start/End: Original strand, 29119370 - 29119494
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| || |||||||||||| || || |||||||||||| ||||| ||||  |||||| |    
T  29119370 tgtgccatgtggcacaccctttaaaaaa-atatatcaaataaagcatctataaagtaacaatgataggtggcacactctaattggccaatggtatatacc 29119468  T
Q  377 attggtaccttaatggtacacaagtg 402  Q
    ||||||||||||||||||||||||||    
T  29119469 attggtaccttaatggtacacaagtg 29119494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 402
Target Start/End: Complemental strand, 32676261 - 32676137
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    ||||||||||||||||  |||||||||| ||||||||||||||| ||||||||||||||||||||| ||||  || ||| ||||| ||||  |||||| |    
T  32676261 tgtgccatgtggcacatgctttaaaaaa-atatatcaaataaagcatttataaagtaacattggtaggtggtgcattctaattggccaatggtatatacc 32676163  T
Q  377 attggtaccttaatggtacacaagtg 402  Q
    ||||||||||||||||||||||||||    
T  32676162 attggtaccttaatggtacacaagtg 32676137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 277 - 402
Target Start/End: Complemental strand, 2569161 - 2569038
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    |||||||  |||||||| ||||||||||  |||||||||||||| |||  ||| |||||||||||| |||||||||||| |||||  |||  |||||| |    
T  2569161 tgtgccacatggcacaccctttaaaaaa--tatatcaaataaagcattggtaatgtaacattggtaggtggcacactctaattggcaaatgatatatacc 2569064  T
Q  377 attggtaccttaatggtacacaagtg 402  Q
    ||||||||||||||||||||||||||    
T  2569063 attggtaccttaatggtacacaagtg 2569038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 342 - 407
Target Start/End: Original strand, 18056134 - 18056199
Alignment:
Q  342 atgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtc 407  Q
    |||||||||||| | |||||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  18056134 atgtggcacactttcattggtcaatattatataacattggtagtttaatggtacacaagtggtgtc 18056199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 396
Target Start/End: Complemental strand, 35534535 - 35534413
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    ||||||||||| |||||||||||| ||||||||||    ||| |||||||  | ||||||| | ||||| |||||||||||||||| | ||  |||| ||    
T  35534535 attaaggtgtgtcatgtggcacaccctttaaaaaa----tattaaataaaacacttataaattgacattagtatgtggcacactctcagtgtccaatgtt 35534440  T
Q  370 atataacattggtaccttaatggtaca 396  Q
    |||||||||||||| ||||||| ||||    
T  35534439 atataacattggtatcttaatgataca 35534413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 402
Target Start/End: Complemental strand, 25161402 - 25161310
Alignment:
Q  310 atcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 402  Q
    ||||||||||  |||||||||||||||||| || |||||||||| | ||||||||||  |||||| |||||  || |||||||||||||||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtg 25161310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 402
Target Start/End: Complemental strand, 6223148 - 6223052
Alignment:
Q  306 atatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 402  Q
    |||||||||||||| || ||||||| |||||||| ||| || |||||  | |||| |||||  |||||||||||| ||| |||||||||||||||||    
T  6223148 atatatcaaataaaatacttataaaataacattgatatatgacacaccttaattgatcaatgatatataacattgatactttaatggtacacaagtg 6223052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 390
Target Start/End: Complemental strand, 8462245 - 8462141
Alignment:
Q  285 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 384  Q
    ||||||| | ||||||||||  ||||| |||||||  ||||||||| ||||||||||| |||||||||| | |||| |||||  |||||| |||||||||    
T  8462245 gtggcacgccctttaaaaaag-tatattaaataaaacatttataaaataacattggtaggtggcacactataattgatcaatgatatataccattggtac 8462147  T
Q  385 cttaat 390  Q
     |||||    
T  8462146 tttaat 8462141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 402
Target Start/End: Original strand, 16679829 - 16679868
Alignment:
Q  363 caatattatataacattggtaccttaatggtacacaagtg 402  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  16679829 caatagtatataacattggtaccttaatggtacacaagtg 16679868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 46435571 - 46435623
Alignment:
Q  350 cactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 402  Q
    |||||| ||||| ||||  |||||| |||||||||||||||||||||||||||    
T  46435571 cactctaattggccaattgtatataccattggtaccttaatggtacacaagtg 46435623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 3688917 - 3688972
Alignment:
Q  311 tcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaat 366  Q
    |||||||||  ||||||||||||||||||||| || | ||||||| ||||||||||    
T  3688917 tcaaataaaacatttataaagtaacattggtaggttgtacactctaattggtcaat 3688972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 399
Target Start/End: Original strand, 7214500 - 7214578
Alignment:
Q  321 tatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaa 399  Q
    |||||||||||||| || | || ||| |||||||| ||||  ||||| ||||||  ||| |||||||||||||||||||    
T  7214500 tatttataaagtaatatcgataggtgacacactctaattgaccaataatatatactattagtaccttaatggtacacaa 7214578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 5581326 - 5581281
Alignment:
Q  357 attggtcaatattatataacattggtaccttaatggtacacaagtg 402  Q
    |||||||||| |||||||||||| ||| | ||||||||||||||||    
T  5581326 attggtcaatgttatataacattagtatcctaatggtacacaagtg 5581281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 7e-56; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 270 - 408
Target Start/End: Complemental strand, 34245700 - 34245562
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  34245700 attaaggtgtgtcatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtacgtggcacacttttattggtcaatgtt 34245601  T
Q  370 atataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    ||||||||||  ||||||||||||||||||||| |||||    
T  34245600 atataacattaataccttaatggtacacaagtggtgtcc 34245562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 270 - 402
Target Start/End: Complemental strand, 11113684 - 11113557
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    |||||||||||||||||||| ||  ||||||||||     ||||||||||| | ||| ||||||||||| ||||||| |||||||||||| |||||| ||    
T  11113684 attaaggtgtgccatgtggcgcatcctttaaaaaa-----atcaaataaagcacttacaaagtaacattagtatgtgacacactcttattagtcaatgtt 11113590  T
Q  370 atataacattggtaccttaatggtacacaagtg 402  Q
    ||||| |||||||||||||||||||||||||||    
T  11113589 atatagcattggtaccttaatggtacacaagtg 11113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 277 - 403
Target Start/End: Original strand, 1211890 - 1212015
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||| ||  ||||||||||||||  | ||||||||| || ||| | ||||  |||||| |    
T  1211890 tgtgccacgtggcacaccctttaaaaaa-atatatcaaataaagcatcgataaagtaacattgaaaggtggcacacactaattagccaatggtatatacc 1211988  T
Q  377 attggtaccttaatggtacacaagtga 403  Q
    |||||||||||||||||||||||||||    
T  1211989 attggtaccttaatggtacacaagtga 1212015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 402
Target Start/End: Original strand, 5403940 - 5404046
Alignment:
Q  295 ctttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggta 394  Q
    |||||||||| ||||||||||||||  || |||||||||||||||||| |||||| ||||| | ||  ||||| |||||| |||| ||||||||||||||    
T  5403940 ctttaaaaaa-atatatcaaataaaacatctataaagtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggta 5404038  T
Q  395 cacaagtg 402  Q
    ||||||||    
T  5404039 cacaagtg 5404046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 398
Target Start/End: Original strand, 32644888 - 32645002
Alignment:
Q  282 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattgg 381  Q
    |||||||||||| |||||||||| ||||| |||||||||||||| |||||||||||| ||| ||| |||||  | ||||| ||||  ||||||  || |     
T  32644888 catgtggcacaccctttaaaaaa-atataacaaataaagtattt-taaagtaacatttgtaggtgacacaccttaattggccaatgatatatactatcga 32644985  T
Q  382 taccttaatggtacaca 398  Q
    || ||||||||||||||    
T  32644986 tatcttaatggtacaca 32645002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 402
Target Start/End: Complemental strand, 11753232 - 11753168
Alignment:
Q  338 tggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 402  Q
    ||||| |||| ||||||| ||||| | ||  |||||| |||||||||||||||||||||||||||    
T  11753232 tggtaggtgggacactctaattggccgatggtatataccattggtaccttaatggtacacaagtg 11753168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 408
Target Start/End: Complemental strand, 31030154 - 31030087
Alignment:
Q  341 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| |  || ||||| |||||| |||||    
T  31030154 tatgtggcacactgttattgaccaatattatataacattggtatcccaacggtacgcaagtggtgtcc 31030087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 270 - 408
Target Start/End: Complemental strand, 1514936 - 1514798
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    ||||||||||| ||| ||| ||||| ||||||||| ||||||||||||||  |||||||||||||||||||||||||| |||||||||||| ||||| ||    
T  1514936 attaaggtgtgacatatggtacacattttaaaaaatatatatcaaataaaacatttataaagtaacattggtatgtggtacactcttattgatcaatgtt 1514837  T
Q  370 atataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  1514836 atataacattggtaccttaatggtacacaagtggtgtcc 1514798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 285 - 396
Target Start/End: Complemental strand, 18168503 - 18168392
Alignment:
Q  285 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 384  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||| |||||  |||||| |||||||||    
T  18168503 gtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtac 18168404  T
Q  385 cttaatggtaca 396  Q
    ||||||||||||    
T  18168403 cttaatggtaca 18168392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 285 - 396
Target Start/End: Complemental strand, 18632060 - 18631949
Alignment:
Q  285 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 384  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||| |||||  |||||| |||||||||    
T  18632060 gtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtac 18631961  T
Q  385 cttaatggtaca 396  Q
    ||||||||||||    
T  18631960 cttaatggtaca 18631949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 277 - 402
Target Start/End: Original strand, 41179609 - 41179733
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    ||||||||||||||||  | |||||||| |||||| |||||||  |||||||||||||||| |||| ||| |||||| | ||||| ||||  |||||| |    
T  41179609 tgtgccatgtggcacatccattaaaaaa-atatattaaataaaacatttataaagtaacatcggtaggtgacacactttaattggccaatgatatatatc 41179707  T
Q  377 attggtaccttaatggtacacaagtg 402  Q
    ||||||||||||||||||||||||||    
T  41179708 attggtaccttaatggtacacaagtg 41179733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 277 - 402
Target Start/End: Original strand, 24337876 - 24338000
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    ||||| ||||||||||| |||||||||  ||||||||||||||| || ||||||||||||||||||  ||||||||||| ||||  | ||  |||||| |    
T  24337876 tgtgctatgtggcacaccctttaaaaat-atatatcaaataaagcatctataaagtaacattggtagatggcacactctaattgaccgatggtatatacc 24337974  T
Q  377 attggtaccttaatggtacacaagtg 402  Q
    |||| ||||||||| |||||||||||    
T  24337975 attgctaccttaatagtacacaagtg 24338000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 395
Target Start/End: Original strand, 4708353 - 4708470
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    ||||||| ||||||||| |||||||||  ||||||||||||||  ||||||||||||||||||||| ||| |||||| | |||||   ||  |||||  |    
T  4708353 tgtgccacgtggcacaccctttaaaaat-atatatcaaataaaacatttataaagtaacattggtaggtgacacactttaattggcgcatgatatatgcc 4708451  T
Q  377 attggtaccttaatggtac 395  Q
    |||||||||||| ||||||    
T  4708452 attggtaccttagtggtac 4708470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 402
Target Start/End: Original strand, 11254082 - 11254197
Alignment:
Q  285 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 384  Q
    ||||||||| |||||||||   |||||||||||||  ||||||||||||||||||||| |||| | |||  || ||||||||  |||||| ||||||||     
T  11254082 gtggcacaccctttaaaaatg-tatatcaaataaaacatttataaagtaacattggtaggtggtatact-ataatggtcaatgatatatatcattggtaa 11254179  T
Q  385 cttaatggtacacaagtg 402  Q
     |||||||||||||||||    
T  11254180 tttaatggtacacaagtg 11254197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 403
Target Start/End: Original strand, 32825874 - 32826006
Alignment:
Q  270 attaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatatt 369  Q
    |||||| |||| |||||| ||||  |||| ||||| ||||||||||||||  |  |||||| |||||||| |||||| || ||||| ||||| ||||  |    
T  32825874 attaagatgtgtcatgtgacacaaccttttaaaaa-atatatcaaataaaacacatataaaataacattgatatgtgacatactctaattggccaatggt 32825972  T
Q  370 atataacattggtaccttaatggtacacaagtga 403  Q
    ||| ||||||| ||| ||||||||||||||||||    
T  32825973 atacaacattgatactttaatggtacacaagtga 32826006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 34306 - 34195
Alignment:
Q  289 cacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtacctta 388  Q
    ||||| ||||||||||  ||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||||| |||||| |||||||||||||    
T  34306 cacaccctttaaaaaa--tatatcaaataaaatatttataaagtaatattggtaagtggcacactctaattggccaataatatataccattggtacctta 34209  T
Q  389 atggtacacaagtg 402  Q
    ||||||||||||||    
T  34208 atggtacacaagtg 34195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 285 - 402
Target Start/End: Complemental strand, 35341653 - 35341537
Alignment:
Q  285 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 384  Q
    ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||||||| |||||||||| | ||||||||||  |||||| |||||||||    
T  35341653 gtggcacaccctttaaaaaag-tatatcaaataaaacatttataaagtaacattggtaggtggcacactataattggtcaatggtatatatcattggtac 35341555  T
Q  385 cttaatggtacacaagtg 402  Q
    ||||||||||||||||||    
T  35341554 cttaatggtacacaagtg 35341537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 282 - 402
Target Start/End: Complemental strand, 48250274 - 48250155
Alignment:
Q  282 catgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattgg 381  Q
    ||||| ||| || |||||||||| | ||||||||||||| || |||||||||||||||||| |||||||||||| ||||  ||||  |||||| ||||||    
T  48250274 catgtagcataccctttaaaaaaaa-atatcaaataaagcatctataaagtaacattggtaggtggcacactctaattgaccaatgatatatatcattgg 48250176  T
Q  382 taccttaatggtacacaagtg 402  Q
    |||||||||||||||||||||    
T  48250175 taccttaatggtacacaagtg 48250155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 277 - 402
Target Start/End: Complemental strand, 48072512 - 48072390
Alignment:
Q  277 tgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataac 376  Q
    ||||||| ||||||||| |||||||||| ||| |||||||||| |||||||||| ||||||||  |||||||||||||| |||| |||||  ||||  |     
T  48072512 tgtgccacgtggcacaccctttaaaaaa-atacatcaaataaaatatttataaaataacattgaaatgtggcacactctaattgatcaatggtatacta- 48072415  T
Q  377 attggtaccttaatggtacacaagtg 402  Q
     ||||||||||||| |||||||||||    
T  48072414 -ttggtaccttaatagtacacaagtg 48072390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 399
Target Start/End: Original strand, 31306951 - 31307041
Alignment:
Q  310 atcaaataaagtatttataaagtaacattggtatgtggcacactct-tattggtcaatattatataacattggtaccttaatggtacacaa 399  Q
    ||||||||||| ||||||||||||||||||||| || ||||||| |  ||||| ||||  |||||| ||||| ||| ||||||||||||||    
T  31306951 atcaaataaagcatttataaagtaacattggtaggtagcacactttaaattggacaatgatatatatcattgatactttaatggtacacaa 31307041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 32694624 - 32694677
Alignment:
Q  285 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattg 339  Q
    ||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  32694624 gtggcacaccctttaaaaaa-atatatcaaataaagaatttataaagtaacattg 32694677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 277 - 403
Target Start/End: Original strand, 13051 - 13177
Alignment:
Q  277 tgtgccatgtggcaca-cactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataa 375  Q
    ||||||| |||||||| | |||||||||| ||||||||||||||| ||  ||||||||||||||  | ||||||||| || ||| | ||||  ||||||     
T  13051 tgtgccacgtggcacaaccctttaaaaaa-atatatcaaataaagcatcgataaagtaacattgaaaggtggcacacactaattagccaatggtatatac 13149  T
Q  376 cattggtaccttaatggtacacaagtga 403  Q
    ||||||||||||||||||||||||||||    
T  13150 cattggtaccttaatggtacacaagtga 13177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 402
Target Start/End: Original strand, 23168 - 23263
Alignment:
Q  301 aaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaag 400  Q
    |||| |||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||||  ||||      | ||||||||||||||||||||    
T  23168 aaaaaatatatcaaataaaatatttataaagtaaaattggtaggtggcacactctaattggccaatgatata------tcgtaccttaatggtacacaag 23261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 23139 - 23094
Alignment:
Q  357 attggtcaatattatataacattggtaccttaatggtacacaagtg 402  Q
    ||||| ||||| |||||| |||||||||||||||| ||||||||||    
T  23139 attggccaatagtatataccattggtaccttaatgatacacaagtg 23094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 402
Target Start/End: Complemental strand, 11311 - 11196
Alignment:
Q  285 gtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggtcaatattatataacattggtac 384  Q
    ||||||||| |||||||||   |||||||||||||  ||||||||||||||||||||| |||| | |||  || ||||||||  |||||| ||||||||     
T  11311 gtggcacaccctttaaaaatg-tatatcaaataaaacatttataaagtaacattggtaggtggtatact-ataatggtcaatgatatatatcattggtaa 11214  T
Q  385 cttaatggtacacaagtg 402  Q
     |||||||||||||||||    
T  11213 tttaatggtacacaagtg 11196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 402
Target Start/End: Complemental strand, 6486 - 6425
Alignment:
Q  341 tatgtggcacactcttattggtcaatattatataacattggtaccttaatggtacacaagtg 402  Q
    ||||||||||||  ||||||| |||| ||||||||||||| || |  |||||||||||||||    
T  6486 tatgtggcacacctttattggccaatgttatataacattgatatcccaatggtacacaagtg 6425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 28119 - 28164
Alignment:
Q  363 caatattatataacattggtaccttaatggtacacaagtgatgtcc 408  Q
    |||||||||||||||| |||| || ||||||||||||||| |||||    
T  28119 caatattatataacatcggtatctcaatggtacacaagtggtgtcc 28164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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