View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8581_high_12 (Length: 398)
Name: NF8581_high_12
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 1060803 - 1061068
Alignment:
| Q |
16 |
agtttctcgtagcaacactcttgaggtgtttgtgaacaaataataaataaactacaagtaaaaagatagtgcatgattaaaataaaccatatgatcacac |
115 |
Q |
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| T |
1060803 |
agtttctcgtagcaacactctttgggtgtttgtgaacaaataataaataaactacaagtaaaaagatagtgcatgattaaaataaaccatatgatcacac |
1060902 |
T |
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| Q |
116 |
acgtagaaacnnnnnnnnnnnnnnnnnnnnnnnagtcggctatttttaagtatacatatctctcaagaaagatccgtcaaaaaatatctctcaaagaaga |
215 |
Q |
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| T |
1060903 |
acgtagaaactatatggatatatatataatataagtcggctatttttaagtatacatatctctcaagaaagatccgtcaaaaaatatctctcaaagaaga |
1061002 |
T |
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| Q |
216 |
gaccaattcttattcaaaattggagacttgaataatcaatatgcatggtcgtattcgtatatcatc |
281 |
Q |
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| T |
1061003 |
gactaattcttattcaaaattggagacttgaataatcaatatgcatggtcgtattcgtatatcatc |
1061068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 304 - 385
Target Start/End: Original strand, 1061092 - 1061173
Alignment:
| Q |
304 |
gtgacatggattcttcatattataatttggaatttgaaatttatacatacgtacgtacaataaagaccaagaaagttgagaa |
385 |
Q |
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| T |
1061092 |
gtgacatgcattcttcatattataatttggaatttgaaatttatacatatgtacgtacaataaagaccaaaaaagttgagaa |
1061173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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