View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8581_high_30 (Length: 252)
Name: NF8581_high_30
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 28130334 - 28130596
Alignment:
| Q |
1 |
tgcctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgct |
100 |
Q |
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| T |
28130334 |
tgcctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgct |
28130433 |
T |
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| Q |
101 |
tctacacggaattgaactcaacccaacgtgactatgctcagaccgctcaagcatgtgggaaag-----------------gtatggccgagcaaaaattg |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||| |
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| T |
28130434 |
tctacacggaattgaactcaacccaacgtgactatgctcagaccgctcaagcatgtgggaaggctctgattaaacgaagtgcttgaccgagcaaaaattg |
28130533 |
T |
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| Q |
184 |
aagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
246 |
Q |
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| T |
28130534 |
aagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
28130596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 44821281 - 44821119
Alignment:
| Q |
1 |
tgcctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgct |
100 |
Q |
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||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44821281 |
tgcctaacatgtaacatatgctttcatagctttcacttgctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgct |
44821182 |
T |
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| Q |
101 |
tcta--cacggaattgaactcaacccaacgtgactatgctcagaccgctcaagcatgtgggaa |
161 |
Q |
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|||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
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| T |
44821181 |
tctacgcacggaattgaactcaactcaacgggactatgctcagactgctcaagcatgtgggaa |
44821119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 44821085 - 44821009
Alignment:
| Q |
170 |
ccgagcaaaaattgaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44821085 |
ccgagcaaaaattgaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
44821009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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