View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8581_high_7 (Length: 446)
Name: NF8581_high_7
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_high_7 |
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| [»] scaffold2125 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 110 - 428
Target Start/End: Complemental strand, 2506249 - 2505929
Alignment:
| Q |
110 |
agggatatgaaaatatagaacatcactacaaacgtgtaatgatttaatgttgacctgtctgggaacaaagcttaaggatggcgcagttgttgtgctcatg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2506249 |
agggatatgaaaatatagaacatcactacaaacgtgtaatgatttaatgttgacctgtctgggaacaaagcttaaggatggcgcagttgttgtgcccatg |
2506150 |
T |
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| Q |
210 |
ctacaacaaaccaatgtagtggatgaggaacttcggttcggttgaggattgctctgcgatggttgaccacggtaccatacaagatgaatgaacttgt-cn |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2506149 |
ctacaacaaaccaatgtagtggatgaggaacttcggttcggttgaggattgctctgcgatggttgaccacggtaccatacaagatgaatgaacttgtaaa |
2506050 |
T |
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| Q |
309 |
nnnnnnnntaat--taatgaatgaagggttgagatgagctcagctatcattaaaatgaatgaatggttgagattagttcactggagaaaaaattcatgcc |
406 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
2506049 |
aaaaataataataataatgaatgaagggttgagatgagctcagctatcattaaaatgaatgaattgttgagattagttcacaggagaaaaaattcatgcc |
2505950 |
T |
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| Q |
407 |
agacaaatcatttcccaagaac |
428 |
Q |
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|||| ||||||||||||||||| |
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| T |
2505949 |
agac-aatcatttcccaagaac |
2505929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 9507425 - 9507380
Alignment:
| Q |
115 |
tatgaaaatatagaacatcactacaaacgtgtaatgatttaatgtt |
160 |
Q |
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| T |
9507425 |
tatgaaaatatcgaacattactacaaacttgtaatgatctaatgtt |
9507380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 9515400 - 9515355
Alignment:
| Q |
115 |
tatgaaaatatagaacatcactacaaacgtgtaatgatttaatgtt |
160 |
Q |
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| T |
9515400 |
tatgaaaatatcgaacattactacaaacttgtaatgatctaatgtt |
9515355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 8681984 - 8681912
Alignment:
| Q |
324 |
tgaatgaagggttgagatgagctcagctatcattaaaatgaatgaatggttgagattagttcactggagaaaa |
396 |
Q |
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|||||| |||||||||||||||||| || ||||||||| ||||||||||||||||||||||| | |||||||| |
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| T |
8681984 |
tgaatggagggttgagatgagctcaactgtcattaaaaggaatgaatggttgagattagttcgcaggagaaaa |
8681912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 322 - 397
Target Start/End: Complemental strand, 30916473 - 30916398
Alignment:
| Q |
322 |
aatgaatgaagggttgagatgagctcagctatcattaaaatgaatgaatggttgagattagttcactggagaaaaa |
397 |
Q |
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||||||||||||||||||||||| | |||| ||||||||| ||||||||||||||||||| |||| ||||||||| |
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| T |
30916473 |
aatgaatgaagggttgagatgagttaagctgtcattaaaagaaatgaatggttgagattagctcacaggagaaaaa |
30916398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 7361332 - 7361274
Alignment:
| Q |
326 |
aatgaagggttgagatgagctcagctatcattaaaatgaatgaatggttgagattagtt |
384 |
Q |
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| T |
7361332 |
aatgaagggttgagatgagctcaactgtcattaaaaggaatgaatggttgagattagtt |
7361274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 396
Target Start/End: Original strand, 7362022 - 7362091
Alignment:
| Q |
322 |
aatgaatgaagggttgagatgagctcagctatcattaaaatgaatgaatggttgagattagttcactggagaaaa |
396 |
Q |
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||||||| ||||||| ||||||||||| || |||||| |||||||||| |||||||||||||| |||||||| |
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| T |
7362022 |
aatgaataaagggtttagatgagctca---at--ttaaaaggaatgaatggctgagattagttcacaggagaaaa |
7362091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2125 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold2125
Description:
Target: scaffold2125; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 999 - 1051
Alignment:
| Q |
110 |
agggatatgaaaatatagaacatcactacaaacgtgtaatgatttaatgttga |
162 |
Q |
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| T |
999 |
agggatatgaacatatagaacatcattacaaaattgtaatgatctaatattga |
1051 |
T |
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